Getting Started
Overview
Installation
API
3D Attributes Animations and Visualization Transitions Area Graphs Aspect Ratio, Space and width Axis Bar Graphs Bin Plots Bins Boxplot Graphs Circular Graphs Citations or References Clustering Colors Combination Plots Confidence Intervals Contours Correlation Graphs DOE Data Data Context Data Customizer Data Faceting Data Filters Data Point Attributes Data Ratio Reference Data Selection Data Sorting Data Table Data Table/Filter Data Time Series Data Transformation Data UI Widgets Debug Decorations Dendrograms Density Plots Dotplot Graphs Effect Error Bars Events Fish Graphs Fit Lines Foreground and Background Gantt Charts General General Attributes Genome Browser Genome Browser Features Genome Browser Features: General parameters used in genome browser features Genome Browser Sequences Genome Browser Sequences: General parameters used in genome browser sequeces Genome Browser Tracks Genome Browser Tracks: General parameters used in genome browser tracks Gradients Graph Metadata Grey Out HTML Widgets Heatmap Color Indicators Heatmap Graphs Hierarchy Histograms Ideograms Images Kaplan Meier Plots LLM Legends Line Graphs Lines Loess Lollipop Graphs Manhattan Plots Manhattan and ManhattanCNV Plots Maps Maps Albers Maps Leaflet Maps Orthographic Margins Meter Graphs Missing Data Motion Charts Network Algorithm Parameters Network Cola Algorithm Parameters Network Communities Network Graphs Network Node and Edge Attributes Oncoprint Graphs Overlays Parallel Coordinates Graphs Pie Charts Plot and Panel Area Plot and Panel Areas Plot area Print Quantile Regression Plots R R-Axis Random Regression Remote Procedures Ridgeline Plots Samples Sankey Diagrams Scatter Plot Matrix Scatter Plots Shadows Shapes Stream Plots Swimmer Graphs Tag Cloud Text Text Placement Time Series Titles and Subtitles Transparency Treemap Graphs Trees UpSet Plots Variables Venn Diagrams Violin Plots Visium Plots X-Axis Y-Axis Z-Axis Zooming, Panning and Resizing cxplot false

Data Context : Data context related parameters

# asSampleFactors

Array containing variable names. Numeric variable data (in rows) to be treated as a sample factor (move from y to x object). This parameter accomplishes the same as the function switchVarToAnnotation at load time. It can be used in conjunction with the parameter stringSampleFactors to be treated as a string. TO DO: write example
Type: array
Default: []
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, DotLine, Dotplot, Fish, Gantt, Heatmap, Line, ParallelCoordinates, Pie, Scatter2D, Scatter3D, ScatterBubble2D, Stacked, StackedLine, StackedPercent, StackedPercentLine

# asVariableFactors

Array containing sample names. Numeric sample data (in columns) to be treated as a variable factor (move from y to z object). This parameter accomplishes the same as the function switchSmpToAnnotation at load time. It can be used in conjunction with the parameter stringVariableFactors to be treated as a string. TO DO: write example
Type: array
Default: []
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, DotLine, Dotplot, Fish, Gantt, Heatmap, Line, ParallelCoordinates, Pie, Scatter2D, Scatter3D, ScatterBubble2D, Stacked, StackedLine, StackedPercent, StackedPercentLine

# stringEdgeAttributes

Array containing edge attributes. The numeric edge attributes will be treated as strings. This parameter accomplishes the same as the function switchNumericToString for edges at load time
Type: array
Default: []
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, DotLine, Dotplot, Fish, Gantt, Heatmap, Line, ParallelCoordinates, Pie, Scatter2D, Scatter3D, ScatterBubble2D, Stacked, StackedLine, StackedPercent, StackedPercentLine

# stringNodeAttributes

Array containing node attributes. The numeric node attributes will be treated as strings. This parameter accomplishes the same as the function switchNumericToString for nodes at load time
Type: array
Default: []
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, DotLine, Dotplot, Fish, Gantt, Heatmap, Line, ParallelCoordinates, Pie, Scatter2D, Scatter3D, ScatterBubble2D, Stacked, StackedLine, StackedPercent, StackedPercentLine

# stringSampleFactors

Array containing sample factors. The numeric sample factors will be treated as strings. This parameter accomplishes the same as the function switchNumericToString for samples at load time. It can be used in conjunction with the parameter asSampleFactors. TO DO: write example
Type: array
Default: []
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, DotLine, Dotplot, Fish, Gantt, Heatmap, Line, ParallelCoordinates, Pie, Scatter2D, Scatter3D, ScatterBubble2D, Stacked, StackedLine, StackedPercent, StackedPercentLine

# stringVariableFactors

Array containing variable factors. The numeric variable factors will be treated as strings. This parameter accomplishes the same as the function switchNumericToString for variables at load time. It can be used in conjunction with the parameter asVariableFactors. TO DO: write example
Type: array
Default: []
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, DotLine, Dotplot, Fish, Gantt, Heatmap, Line, ParallelCoordinates, Pie, Scatter2D, Scatter3D, ScatterBubble2D, Stacked, StackedLine, StackedPercent, StackedPercentLine

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