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cxplot
false
Heatmap Graphs : General parameters for heatmaps
#
adjustAspectRatioHeatmapIndicator
Flag to adjust aspect ratio of heatmap indicator. It depends on the adjustAspectRatio parameter; that is, the adjustAspectRatio parameter has to set to true for the adjustAspectRatioHeatmapIndicator to take effect
Type:
boolean
Default:
true
Used in:
Heatmap
#
grpIndicesStart
Number that indicates starting point for grouped samples in heatmaps when the canvas is zoom in
Type:
integer
Private
Default:
-1
Used in:
Heatmap
#
heatmapAutoAdjust
Flag to adjust the range of the heatmaps when zooming in/out
Type:
boolean
Default:
false
Used in:
Heatmap
#
heatmapCellBox
Flag to print a box around the heatmap cells
Type:
boolean
Default:
true
Used in:
Heatmap
#
heatmapCellBoxColor
Color for the heatmap boxes around the cells
Type:
color
Default:
rgb(102,102,102)
Used in:
Heatmap
#
heatmapCellBoxColorHighlight
Color for the highlighted heatmap cells
Type:
color
Default:
rgb(255,215,0)
Used in:
Heatmap
#
heatmapCellBoxHighlightWidth
Width for the highlighting heatmap boxes around the cells
Type:
float
Default:
1
Used in:
Heatmap
#
heatmapCellBoxWidth
Width for the heatmap boxes around the cells
Type:
float
Default:
1
Used in:
Heatmap
#
heatmapCollapse
Flag to collapse cells in heatmaps of type circle or hexagon. If true cells are ploted without outline otherwise the outline is the foreground color
Type:
boolean
Default:
false
Used in:
Heatmap
#
heatmapIndicatorHeight
Length in pixels for the heatmap indicator
Type:
integer
Default:
35
Used in:
Heatmap
#
heatmapIndicatorHistogram
Flag to show histogram in the heatmap indicator
Type:
boolean
Default:
false
Used in:
Heatmap
#
heatmapIndicatorHistogramColor
Color for the heatmap indicator histogram
Type:
color
Default:
rgb(0,255,255)
Used in:
Heatmap
#
heatmapIndicatorPosition
Position for the heatmap indicator
Type:
string
Default:
right
Options:
topLeft
,
top
,
topRight
,
right
Used in:
Heatmap
#
heatmapIndicatorWidth
Length in pixels for the heatmap indicator line width used for increase the size of the indicator
Type:
integer
Default:
150
Used in:
Heatmap
#
heatmapType
Type of Heatmap used to overlay a layer on top of an image. Special for spatial transcriptomics and UpSet plots
Type:
string
Default:
normal
Options:
normal
,
circle
,
hexagon
,
upset
Used in:
Heatmap
#
isMultidimensionalData
Flag to indicate if there is more than a single data set
Type:
boolean
Private
Default:
false
Used in:
Heatmap
#
showHeatmapIndicator
Flag to show/hide the heatmap color indicator
Type:
boolean
Default:
true
Used in:
Heatmap
#
smpIndicesStart
Number that indicates starting point for samples in heatmaps when the canvas is zoom in
Type:
integer
Private
Default:
-1
Used in:
Heatmap
#
smpTitleLabelPosition
Position for sample labels
Type:
string
Default:
left
Options:
left
,
right
Used in:
Heatmap
#
varIndicesStart
Number that indicates starting point for variables in heatmaps when the canvas is zoom in
Type:
integer
Private
Default:
-1
Used in:
Heatmap
#
varTitleLabelPosition
Position for variable labels
Type:
string
Default:
bottom
Options:
bottom
,
top
Used in:
Heatmap
On This Page
adjustAspectRatioHeatmapIndicator
grpIndicesStart
heatmapAutoAdjust
heatmapCellBox
heatmapCellBoxColor
heatmapCellBoxColorHighlight
heatmapCellBoxHighlightWidth
heatmapCellBoxWidth
heatmapCollapse
heatmapIndicatorHeight
heatmapIndicatorHistogram
heatmapIndicatorHistogramColor
heatmapIndicatorPosition
heatmapIndicatorWidth
heatmapType
isMultidimensionalData
showHeatmapIndicator
smpIndicesStart
smpTitleLabelPosition
varIndicesStart
varTitleLabelPosition
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