Heatmap Graphs : General parameters for heatmaps

Click in graph to show relevant configuration - Click in hashtag to open in new page

# heatmapAutoAdjust

Flag to adjust the color spectrum of the heatmaps when zooming in/out. The full spectrum range will be utilized to cover the selcted cells in the heatmap if the flag is set to true

Type: boolean

Default: false

Used in: Heatmap

# heatmapCellBox

Flag to print a box around the heatmap cells

Type: boolean

Default: true

Used in: Heatmap

# heatmapCellBoxColor

Color for the heatmap boxes around the cells

Type: color

Default: rgb(102,102,102)

Used in: Heatmap

# heatmapCellBoxColorHighlight

Color for the highlighted heatmap cells

Type: color

Default: rgb(255,215,0)

Used in: Heatmap

# heatmapCellBoxHighlightWidth

Width for the highlighting heatmap boxes around the cells

Type: float

Default: 1

Used in: Heatmap

# heatmapCellBoxWidth

Width for the heatmap boxes around the cells

Type: float

Default: 1

Used in: Heatmap

# heatmapCollapse

Flag to collapse cells in heatmaps of type circle or hexagon. If true cells are ploted without outline otherwise the outline is the foreground color

Type: boolean

Default: false

Used in: Heatmap

# heatmapType

Type of Heatmap used to overlay a layer on top of an image. Special for spatial transcriptomics and UpSet plots

Type: string

Default: normal

Options: normal, circle, hexagon, upset, correlation

Used in: Heatmap

# smpTitleLabelPosition

Position for sample labels

Type: string

Default: left

Options: left, right

Used in: Heatmap

# varTitleLabelPosition

Position for variable labels

Type: string

Default: bottom

Options: bottom, top

Used in: Heatmap