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Genome Browser Features: General parameters used in genome browser features
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cxplot
false
Histograms : Parameters used to create histograms in 2d scatter plots
#
histogramAsDotplot
Flag to use dots as histogram bars
Type:
boolean
Default:
false
Used in:
Scatter2D
#
histogramBinWidth
Width in actual units for the histogram bin
Type:
float
Default:
false
Used in:
Scatter2D
#
histogramBins
Approximate number of bins in a histogram. It may vary to the actual number used in the histogram to ensure a pretty size for the intervals in the histogram. Default is the same as in ggplot which is 30
Type:
integer
Default:
30
Used in:
Scatter2D
#
histogramBreaks
Numeric vector to set the histogram breaks. It is automatically calculated if not defined using the axisAlgorithm setting and the histogramBins
Type:
array
Default:
[]
Used in:
Scatter2D
#
histogramDensityFillTransparency
Transparency applied to the filled histogram density
Type:
float
Default:
0.85
Used in:
Scatter2D
#
histogramDotplotBorderColor
Color for the border in data points in dotplot histograms
Type:
color
Default:
rgb(215,48,39)
Used in:
Scatter2D
#
histogramDotplotBorderLineType
Type of line for the border in data points in dotplot histograms
Type:
string
Default:
solid
Options:
rect
,
solid
,
spline
,
dotted
,
dashed
,
dotdash
,
longdash
,
twodash
Used in:
Scatter2D
#
histogramDotplotBorderSize
Size for the border line in data points in dotplot histograms
Type:
float
Default:
0.5
Used in:
Scatter2D
#
histogramDotplotColor
Color for the data points in dotplot histograms
Type:
color
Default:
rgb(215,48,39)
Used in:
Scatter2D
#
histogramLowest
Histogram lowest is a boolean. If true, an x[i] equal to the breaks value will be included in the first (or last, for right = FALSE) bar
Type:
boolean
Default:
true
Used in:
Scatter2D
#
histogramMedianLineType
Line type for the histogram median
Type:
string
Default:
dashed
Options:
solid
,
dotted
,
dashed
,
dotdash
,
longdash
,
twodash
Used in:
Scatter2D
#
histogramPathColor
Color for the histogram path. If not specified the it defaults to the color of the histogram bars
Type:
color
Default:
rgb(0,0,0)
Used in:
Scatter2D
#
histogramPathFillTransparency
Transparency applied to the filled histogram path
Type:
float
Default:
0.85
Used in:
Scatter2D
#
histogramPathWidth
Width for the line of the histogram path line
Type:
integer
Default:
2
Used in:
Scatter2D
#
histogramRight
Histogram right is a boolean. If true, the histogram cells are right-closed (left open) intervals
Type:
boolean
Default:
true
Used in:
Scatter2D
#
histogramSizeEstimator
Histogram size estimator
Type:
string
Default:
sturges
Options:
sturges
,
freedmanDiaconis
,
scott
Used in:
Scatter2D
#
histogramStackDir
Direction to stack the dots in dotplot histograms
Type:
string
Default:
down
Options:
down
,
center
,
centerwhole
Used in:
Scatter2D
#
histogramStackRatio
Stack ratio for dotplot histograms. I has to be a value between 0 and 1
Type:
boolean
Default:
1
Used in:
Scatter2D
#
histogramStat
Histogram density type
Type:
string
Default:
count
Options:
density
,
count
Used in:
Scatter2D
#
histogramType
Type of histogram when multiple series are present
Type:
string
Default:
dodged
Options:
dodged
,
staggered
,
stacked
Used in:
Scatter2D
#
showFilledHistogramDensity
Flag to show/hide the filled histogram density
Type:
boolean
Default:
false
Used in:
Scatter2D
#
showFilledHistogramPath
Flag to show/hide the filled histogram path
Type:
boolean
Default:
false
Used in:
Scatter2D
#
showHistogram
Flag or sample annotation to create histogram. If true is specified then the histogram will be done with all data
Type:
string
Default:
false
Used in:
Scatter2D
#
showHistogramBars
Flag to hide the histogram bars
Type:
boolean
Default:
false
Used in:
Scatter2D
#
showHistogramDataPoints
Flag to show/hide the original data point in histograms
Type:
boolean
Default:
false
Used in:
Scatter2D
#
showHistogramDensity
Flag to show/hide the density kernel in histograms
Type:
boolean
Default:
false
Used in:
Scatter2D
#
showHistogramMedian
Flag to show/hide the histogram median
Type:
boolean
Default:
false
Used in:
Scatter2D
#
showHistogramPath
Flag to show/hide the histograms path
Type:
boolean
Default:
false
Used in:
Scatter2D
#
showHistogramQuantiles
Flag to show/hide the quantile 0.25 and 0.75 in density plots
Type:
boolean
Default:
false
Used in:
Scatter2D
On This Page
histogramAsDotplot
histogramBinWidth
histogramBins
histogramBreaks
histogramDensityFillTransparency
histogramDotplotBorderColor
histogramDotplotBorderLineType
histogramDotplotBorderSize
histogramDotplotColor
histogramLowest
histogramMedianLineType
histogramPathColor
histogramPathFillTransparency
histogramPathWidth
histogramRight
histogramSizeEstimator
histogramStackDir
histogramStackRatio
histogramStat
histogramType
showFilledHistogramDensity
showFilledHistogramPath
showHistogram
showHistogramBars
showHistogramDataPoints
showHistogramDensity
showHistogramMedian
showHistogramPath
showHistogramQuantiles
⇧