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3D Attributes Animations and Visualization Transitions Area Graphs Aspect Ratio, Space and width Axis Bar Graphs Bin Plots Bins Boxplot Graphs Circular Graphs Citations or References Clustering Colors Combination Plots Confidence Intervals Contours Correlation Graphs DOE Data Data Context Data Customizer Data Faceting Data Filters Data Point Attributes Data Ratio Reference Data Selection Data Sorting Data Table Data Table/Filter Data Time Series Data Transformation Data UI Widgets Debug Decorations Dendrograms Density Plots Dotplot Graphs Effect Error Bars Events Fish Graphs Fit Lines Foreground and Background Gantt Charts General General Attributes Genome Browser Genome Browser Features Genome Browser Features: General parameters used in genome browser features Genome Browser Sequences Genome Browser Sequences: General parameters used in genome browser sequeces Genome Browser Tracks Genome Browser Tracks: General parameters used in genome browser tracks Gradients Graph Metadata Grey Out Heatmap Color Indicators Heatmap Graphs Hierarchy Histograms Ideograms Images Kaplan Meier Plots Legends Line Graphs Lines Loess Lollipop Graphs Manhattan Plots Maps Maps Albers Maps Leaflet Maps Orthographic Margins Meter Graphs Missing Data Motion Charts Network Algorithm Parameters Network Cola Algorithm Parameters Network Communities Network Graphs Network Node and Edge Attributes Oncoprint Graphs Overlays Parallel Coordinates Graphs Pie Charts Plot and Panel Area Plot and Panel Areas Plot area Print Quantile Regression Plots R R-Axis Random Regression Remote Procedures Ridgeline Plots Samples Sankey Diagrams Scatter Plot Matrix Scatter Plots Shadows Shapes Stream Plots Swimmer Graphs Tag Cloud Text Text Placement Time Series Titles and Subtitles Transparency Treemap Graphs Trees UpSet Plots Variables Venn Diagrams Violin Plots Visium Plots X-Axis Y-Axis Z-Axis Zooming, Panning and Resizing cxplot false

Manhattan Plots : General parameters in scatter plots

# chromosomeLengths

Manhattan Chromosomes length is a sorted array by chromosome with the length in base pairs for each chromosome. It is required when scatterType is manhattan
Type: array
Default: []
Used in: Scatter2D

# manhattanColors

Colors for the manhattan plots
Type: array
Default: [rgb(128,128,128), rgb(135,206,235)]
Used in: Scatter2D

# manhattanContrastColor

Manhattan contrast color
Type: array
Default: rgba(0,0,0,0.1)
Used in: Scatter2D

# manhattanMarkerChromosomeNumber

Sample name included in the data.y.smps object used to map to the chromosome number
Type: string
Default: false
Used in: Scatter2D

# manhattanMarkerLogPValue

Sample name included in the data.y.smps object used to map to the negative log 10 p value
Type: string
Default: false
Options: false
Used in: Scatter2D

# manhattanMarkerPosition

Sample name included in the data.y.smps object used to map to the position in base pairs
Type: string
Default: false
Options: false
Used in: Scatter2D

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