Oncoprint Graphs : General parameters for oncoprints

# oncoprintCNA
String to identify the data object to use to draw the copy number alterations; that is the amplifications (which will be colored red) and deletions (which will be colored blue). It MUST be a file with only two categorical levels
Type: string
Default:
Used in: Heatmap

# oncoprintColSummary
Flag to show column summary in oncoprints
Type: boolean
Default: false
Used in: Heatmap

# oncoprintHeatmapPosition
Position for the heatmap in the oncoprint
Type: string
Default: bottom
Options: right, bottom, left, top
Used in: Heatmap

# oncoprintHeatmapSwitch
Flag to switch to Oncoprint or Heatmap visualization. Requieres data in the data object
Type: boolean
Default: false
Used in: Heatmap

# oncoprintMUT
String to identify the data object to use to draw the mutations. For example missense, non-synonymous, truncating, etc. Each level will be colored in a shade of green
Type: string
Default:
Used in: Heatmap

# oncoprintNoAlterations
Flag to switch to show variables and samples without any alterations
Type: boolean
Default: true
Used in: Heatmap

# oncoprintRowSummary
Flag to show row summary in oncoprints
Type: boolean
Default: false
Used in: Heatmap

# showHeatmapOncoprint
Flag to show/hide the heatmap along with the oncoprint
Type: boolean
Default: false
Used in: Heatmap