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Oncoprint Graphs : General parameters for oncoprints

# isOncoprint

Boolean flag to draw an oncoprint
Type: boolean Private
Default: false
Used in: Heatmap

# oncoprintCNA

String to identify the data object to use to draw the copy number alterations; that is the amplifications (which will be colored red) and deletions (which will be colored blue). It MUST be a file with only two categorical levels
Type: boolean
Default: false
Used in: Heatmap

# oncoprintColSummary

Flag to show column summary in oncoprints
Type: boolean
Default: false
Used in: Heatmap

# oncoprintHeatmapPosition

Position for the heatmap in the oncoprint
Type: string
Default: bottom
Options: right, bottom, left, top
Used in: Heatmap

# oncoprintHeatmapSwitch

Switch to Oncoprint or Heatmap visualization. Requieres data in the data object
Type: boolean
Default: false
Used in: Heatmap

# oncoprintMUT

String to identify the data object to use to draw the mutations. For example missense, non-synonymous, truncating, etc. Each level will be colored in a shade of green
Type: boolean
Default: false
Used in: Heatmap

# oncoprintNoAlterations

Switch to show variables and samples without any alterations
Type: boolean
Default: true
Used in: Heatmap

# oncoprintRowSummary

Flag to show row summary in oncoprints
Type: boolean
Default: false
Used in: Heatmap

# showHeatmapOncoprint

Flag to show/hide the heatmap along with the oncoprint
Type: boolean
Default: false
Used in: Heatmap

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