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3D Attributes Animations and Visualization Transitions Area Graphs Aspect Ratio, Space and width Axis Bar Graphs Bin Plots Bins Boxplot Graphs Circular Graphs Citations or References Clustering Colors Combination Plots Confidence Intervals Contours Correlation Graphs DOE Data Data Customizer Data Filters Data Point Attributes Data Selection Data Table Data Table/Filter Data sorting Debug Decorations Dendrograms Density Plots Dotplot Graphs Effect Error Bars Events Fish Graphs Fit Lines Foreground and Background Gantt Charts General General Attributes Genome Browser Gradients Heatmap Graphs Hierarchy Histograms Ideograms Images Kaplan Meier Plots Legends Line Graphs Lines Loess Maps Margins Meter Graphs Missing Data Motion Charts Network Algorithm Parameters Network Cola Algorithm Parameters Network Communities Network Graphs Network Node and Edge Attributes Oncoprint Graphs Overlays Pie Charts Plot area Quantile Regression Plots R R-Axis Random Regression Remote Procedures Ridgeline Plots Samples Sankey Diagrams Scatter Plot Matrix Scatter Plots Shadows Shapes Tag Cloud Text Time Series Titles and Subtitles Treemap Graphs Trees UpSet Plots Variables Venn Diagrams X-Axis Y-Axis Z-Axis Zooming, Panning and Resizing cxplot false

Scatter Plots : General parameters in scatter plots

# cXscatterColor

Color for the scatter cXplots
Type: color
Default: rgb(0,0,0)
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# chromosomeLengths

Manhattan Chromosomes length is a sorted array by chromosome with the length in base pairs for each chromosome. It is required when scatterType is manhattan
Type: array
Default: []
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# dataLabelBackgroundBorderColor

Color for the border in data labels background
Type: color
Default: rgb(255,255,255)
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# dataLabelBackgroundBorderLineType

Type of line for the border in data labels background
Type: string
Default: solid
Options: rect, solid, spline, dotted, dashed, dotdash, longdash, twodash
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# dataLabelBackgroundBorderSize

Size for the border line in data labels background
Type: float
Default: 0.5
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# dataLabelBackgroundColor

Color for the data labels background
Type: color
Default: rgb(255,255,255)
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# functionColor

Color for the function plots
Type: color
Default: rgb(0,0,0)
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# groupingFactorWindow

The width for the data when grouping in Scatter2D plots. This is the analogous parameter to cut_width in R. It defaults to a fifth of the data range. The scatterType must be boxplot to take this parameter into effect
Type: float
Default: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# isDataLabels

Flag to put a background in data labels
Type: boolean
Default: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# isDataLabelsBackgroundColor

Flag to use the color in the colorDataLabels as a background in data labels
Type: boolean
Default: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# manhattanColors

Colors for the manhattan plots
Type: array
Default: [rgb(128,128,128), rgb(135,206,235)]
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# manhattanContrastColor

Manhattan contrast color
Type: array
Default: rgba(0,0,0,0.1)
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# manhattanMarkerChromosomeNumber

Sample name included in the data.y.smps object used to map to the chromosome number
Type: string
Default: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# manhattanMarkerLogPValue

Sample name included in the data.y.smps object used to map to the negative log 10 p value
Type: string
Default: false
Options: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# manhattanMarkerPosition

Sample name included in the data.y.smps object used to map to the position in base pairs
Type: string
Default: false
Options: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# scatterAxesEqual

Keep same range in both axes
Type: boolean
Default: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# scatterLineAlpha

Transparency applied to lines in scatter plots
Type: float
Default: 1
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# scatterOutlineThreshold

Maximum number of data points before skipping plotting their outline but only the fill color
Type: integer
Default: 50000
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# scatterPointAlpha

Thickness applied to data points in scatter plots
Type: float
Default: 1
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# scatterStreamBandwidth

Scatter stream bandwidth. Tensor for the wiggles of the stream wiggles. A vaulue between 0 and 1
Type: float
Default: 0.75
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# scatterStreamExtraSpan

Scatter stream extra extension for the wiggles. A vaulue between 0 and 1 as in percent
Type: float
Default: 0.01
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# scatterStreamNumber

Number of values for the wiggles
Type: integer
Default: 1000
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# scatterStreamTrueRange

Expand the X axis
Type: string
Default: both
Options: both, min_x, max_x, none
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# scatterStreamType

Type of stream scatter plot
Type: string
Default: mirror
Options: mirror, ridge, proportional
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# scatterStreamWiggles

Order for the streamgraph wiggles
Type: array
Default: []
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# scatterType

Type of scatter plot
Type: string
Default: false
Options: false, line, bar, dot, area, image, lineImage, lineStep, boxplot, visium, manhattan, bin2d, polygon
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# showDataLabels

Flag to show/hide the data labels in scatter plots
Type: boolean
Default: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# visiumFixedAspectRatio

Fix aspect ratio for visium plots
Type: boolean
Default: true
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# visiumFlip

Invert the data in visium plots.
Type: boolean
Default: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# visiumPanning

No panning on visium plots so dragging will always zoom
Type: boolean
Default: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

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