Scatter Plots : General parameters in scatter plots

# chromosomeLengths

Manhattan Chromosomes length is a sorted array by chromosome with the length in base pairs for each chromosome. It is required when scatterType is manhattan
Type: array
Default: []

# functionColor

Color for the function plots
Type: color
Default: rgb(0,0,0)

# groupingFactorWindow

The width for the data when grouping in Scatter2D plots. This is the analogous parameter to cut_width in R. It defaults to a fifth of the data range. The scatterType must be boxplot to take this parameter into effect
Type: float
Default: false

# manhattanColors

Colors for the manhattan plots
Type: array
Default: [rgb(128,128,128), rgb(135,206,235)]

# manhattanContrastColor

Manhattan contrast color
Type: array
Default: rgba(0,0,0,0.1)

# manhattanMarkerChromosomeNumber

Sample name included in the data.y.smps object used to map to the chromosome number
Type: string
Default: false

# manhattanMarkerLogPValue

Sample name included in the data.y.smps object used to map to the negative log 10 p value
Type: string
Default: false
Options: false

# manhattanMarkerPosition

Sample name included in the data.y.smps object used to map to the position in base pairs
Type: string
Default: false
Options: false

# scatterAxesEqual

Keep same range in both axes
Type: boolean
Default: false

# scatterOutlineThreshold

Maximum number of data points before skipping plotting their outline but only the fill color
Type: integer
Default: 50000

# scatterType

Type of scatter plot
Type: string
Default: false
Options: false, line, bar, dot, image, lineImage, lineStep, boxplot, visium, manhattan, bin2d

# visiumFixedAspectRatio

Fix aspect ratio for visium plots
Type: boolean
Default: true

# visiumFlip

Invert the data in visium plots.
Type: boolean
Default: false

# visiumPanning

No panning on visium plots so dragging will always zoom
Type: boolean
Default: false