Getting Started
Overview
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API
3D Attributes Animations and Visualization Transitions Area Graphs Aspect Ratio, Space and width Axis Bar Graphs Bin Plots Bins Boxplot Graphs Circular Graphs Citations or References Clustering Colors Combination Plots Contours Correlation Graphs DOE Data Data Customizer Data Filters Data Point Attributes Data Selection Data Table Data Table/Filter Data sorting Debug Decorations Dendrograms Density Plots Dotplot Graphs Effect Error Bars and Confidence Intervals Events Fish Graphs Foreground and Background Gantt Charts General General Attributes Genome Browser Gradients Heatmap Graphs Hierarchy Histograms Images Legends Line Graphs Lines Loess Maps Margins Meter Graphs Missing Data Motion Charts Network Algorithm Parameters Network Communities Network Graphs Network Node and Edge Attributes Oncoprint Graphs Overlays Pie Charts Plot area Quantile Regression Plots R R-Axis Random Remote Procedures Ridgeline Plots Samples Sankey Diagrams Scatter Plot Matrix Scatter Plots Shadows Shapes Tag Cloud Text Time Series Titles and Subtitles Treemap Graphs Trees UpSet Plots Variables Venn Diagrams X-Axis Y-Axis Z-Axis Zooming, Panning and Resizing cxplot false

Scatter Plots : General parameters in scatter plots

# chromosomeLengths

Manhattan Chromosomes length is a sorted array by chromosome with the length in base pairs for each chromosome. It is required when scatterType is manhattan
Type: array
Default: []
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# functionColor

Color for the function plots
Type: color
Default: rgb(0,0,0)
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# groupingFactorWindow

The width for the data when grouping in Scatter2D plots. This is the analogous parameter to cut_width in R. It defaults to a fifth of the data range. The scatterType must be boxplot to take this parameter into effect
Type: float
Default: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# manhattanColors

Colors for the manhattan plots
Type: array
Default: [rgb(128,128,128), rgb(135,206,235)]
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# manhattanContrastColor

Manhattan contrast color
Type: array
Default: rgba(0,0,0,0.1)
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# manhattanMarkerChromosomeNumber

Sample name included in the data.y.smps object used to map to the chromosome number
Type: string
Default: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# manhattanMarkerLogPValue

Sample name included in the data.y.smps object used to map to the negative log 10 p value
Type: string
Default: false
Options: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# manhattanMarkerPosition

Sample name included in the data.y.smps object used to map to the position in base pairs
Type: string
Default: false
Options: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# scatterAxesEqual

Keep same range in both axes
Type: boolean
Default: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# scatterOutlineThreshold

Maximum number of data points before skipping plotting their outline but only the fill color
Type: integer
Default: 50000
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# scatterType

Type of scatter plot
Type: string
Default: false
Options: false, line, bar, dot, image, lineImage, lineStep, boxplot, visium, manhattan, bin2d
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# visiumFixedAspectRatio

Fix aspect ratio for visium plots
Type: boolean
Default: true
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# visiumFlip

Invert the data in visium plots.
Type: boolean
Default: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

# visiumPanning

No panning on visium plots so dragging will always zoom
Type: boolean
Default: false
Used in: Scatter2D, Scatter3D, ScatterBubble2D

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