Scatter Plots : General parameters in scatter plots

# cXscatterColor

Color for the scatter cXplots
Type: color
Default: rgb(0,0,0)

# chromosomeLengths

Manhattan Chromosomes length is a sorted array by chromosome with the length in base pairs for each chromosome. It is required when scatterType is manhattan
Type: array
Default: []

# dataLabelBackgroundBorderColor

Color for the border in data labels background
Type: color
Default: rgb(255,255,255)

# dataLabelBackgroundBorderLineType

Type of line for the border in data labels background
Type: string
Default: solid
Options: rect, solid, spline, dotted, dashed, dotdash, longdash, twodash

# dataLabelBackgroundBorderSize

Size for the border line in data labels background
Type: float
Default: 0.5

# dataLabelBackgroundColor

Color for the data labels background
Type: color
Default: rgb(255,255,255)

# functionColor

Color for the function plots
Type: color
Default: rgb(0,0,0)

# groupingFactorWindow

The width for the data when grouping in Scatter2D plots. This is the analogous parameter to cut_width in R. It defaults to a fifth of the data range. The scatterType must be boxplot to take this parameter into effect
Type: float
Default: false

# isDataLabels

Flag to put a background in data labels
Type: boolean
Default: false

# isDataLabelsBackgroundColor

Flag to use the color in the colorDataLabels as a background in data labels
Type: boolean
Default: false

# manhattanColors

Colors for the manhattan plots
Type: array
Default: [rgb(128,128,128), rgb(135,206,235)]

# manhattanContrastColor

Manhattan contrast color
Type: array
Default: rgba(0,0,0,0.1)

# manhattanMarkerChromosomeNumber

Sample name included in the data.y.smps object used to map to the chromosome number
Type: string
Default: false

# manhattanMarkerLogPValue

Sample name included in the data.y.smps object used to map to the negative log 10 p value
Type: string
Default: false
Options: false

# manhattanMarkerPosition

Sample name included in the data.y.smps object used to map to the position in base pairs
Type: string
Default: false
Options: false

# scatterAxesEqual

Keep same range in both axes
Type: boolean
Default: false

# scatterLineAlpha

Transparency applied to lines in scatter plots
Type: float
Default: 1

# scatterOutlineThreshold

Maximum number of data points before skipping plotting their outline but only the fill color
Type: integer
Default: 50000

# scatterPointAlpha

Thickness applied to data points in scatter plots
Type: float
Default: 1

# scatterStreamBandwidth

Scatter stream bandwidth. Tensor for the wiggles of the stream wiggles. A vaulue between 0 and 1
Type: float
Default: 0.75

# scatterStreamExtraSpan

Scatter stream extra extension for the wiggles. A vaulue between 0 and 1 as in percent
Type: float
Default: 0.01

# scatterStreamNumber

Number of values for the wiggles
Type: integer
Default: 1000

# scatterStreamTrueRange

Expand the X axis
Type: string
Default: both
Options: both, min_x, max_x, none

# scatterStreamType

Type of stream scatter plot
Type: string
Default: mirror
Options: mirror, ridge, proportional

# scatterStreamWiggles

Order for the streamgraph wiggles
Type: array
Default: []

# scatterType

Type of scatter plot
Type: string
Default: false
Options: false, line, bar, dot, area, image, lineImage, lineStep, boxplot, visium, manhattan, bin2d, polygon

# showDataLabels

Flag to show/hide the data labels in scatter plots
Type: boolean
Default: false

# visiumFixedAspectRatio

Fix aspect ratio for visium plots
Type: boolean
Default: true

# visiumFlip

Invert the data in visium plots.
Type: boolean
Default: false

# visiumPanning

No panning on visium plots so dragging will always zoom
Type: boolean
Default: false