Getting Started
Overview
Installation
API
3D Attributes Animations and Visualization Transitions Area Graphs Aspect Ratio, Space and width Axis Bar Graphs Bin Plots Bins Boxplot Graphs Circular Graphs Citations or References Clustering Colors Combination Plots Confidence Intervals Contours Correlation Graphs DOE Data Data Context Data Customizer Data Faceting Data Filters Data Point Attributes Data Ratio Reference Data Selection Data Sorting Data Table Data Table/Filter Data Time Series Data Transformation Data UI Widgets Debug Decorations Dendrograms Density Plots Dotplot Graphs Effect Error Bars Events Fish Graphs Fit Lines Foreground and Background Gantt Charts General General Attributes Genome Browser Genome Browser Features Genome Browser Features: General parameters used in genome browser features Genome Browser Sequences Genome Browser Sequences: General parameters used in genome browser sequeces Genome Browser Tracks Genome Browser Tracks: General parameters used in genome browser tracks Gradients Graph Metadata Grey Out Heatmap Color Indicators Heatmap Graphs Hierarchy Histograms Ideograms Images Kaplan Meier Plots Legends Line Graphs Lines Loess Lollipop Graphs Manhattan Plots Maps Maps Albers Maps Leaflet Maps Orthographic Margins Meter Graphs Missing Data Motion Charts Network Algorithm Parameters Network Cola Algorithm Parameters Network Communities Network Graphs Network Node and Edge Attributes Oncoprint Graphs Overlays Parallel Coordinates Graphs Pie Charts Plot and Canvas Area Plot area Print Quantile Regression Plots R R-Axis Random Regression Remote Procedures Ridgeline Plots Samples Sankey Diagrams Scatter Plot Matrix Scatter Plots Shadows Shapes Stream Plots Swimmer Graphs Tag Cloud Text Text Placement Time Series Titles and Subtitles Transparency Treemap Graphs Trees UpSet Plots Variables Venn Diagrams Violin Plots Visium Plots X-Axis Y-Axis Z-Axis Zooming, Panning and Resizing cxplot false

UpSet Plots : General parameters for upset

# nUpSetIntercepts

Number of intercepts to draw
Type: integer
Default: 40
Used in: Heatmap

# nUpSets

Number of sets to draw
Type: integer
Default: 5
Used in: Heatmap

# upSetIntercepts

Array containing the names of the intercepts to include. Sets must be separated by &&
Type: array
Default: []
Used in: Heatmap

# upSetSets

Array containing the names of the sets to include
Type: array
Default: []
Used in: Heatmap

# upsetLineSizeFactor

Adjust width of lines in matrix plot
Type: float
Default: 1
Used in: Heatmap

# upsetMainBarColor

Color for the the main bar plot
Type: color
Default: rgb(59,59,59)
Used in: Heatmap

# upsetMatrixColor

Color for the the intersection points
Type: color
Default: rgb(59,59,59)
Used in: Heatmap

# upsetMatrixDotAlpha

Transparency of the empty intersections points in the matrix
Type: float
Default: 0.2
Used in: Heatmap

# upsetMatrixPlotBarRatio

Ratio between matrix plot and main bar plot
Type: float
Default: 0.7
Used in: Heatmap

# upsetPointSizeFactor

Adjust the size of points in matrix plot
Type: float
Default: 1
Used in: Heatmap

# upsetSetsBarColor

Color for the set bar plot
Type: color
Default: rgb(59,59,59)
Used in: Heatmap

# upsetShadeAlpha

Transparency of shading in matrix
Type: float
Default: 0.1
Used in: Heatmap

# upsetShadeColor

Color for the row shading in matrix
Type: color
Default: rgb(159,159,159)
Used in: Heatmap

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