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Graph Type Examples
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Area
AreaLine
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Genome
Heatmap
Hexplot-Binplot
Histogram
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Line
Lollipop
Map
Meter
Network
NonLinear-Fit
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Oncoprint
ParallelCoordinates
Pie
Radar
Remote-Graphs
Ridge-Line
SPLOM
Sankey
Scatter2D
ScatterBubble2D
Scatter3D
Stacked
StakedLine
StackedPercent
StackedPercentLine
Streamgraph
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TCGA
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Tree
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UpSet
Venn
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Getting Started
Overview
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3D Attributes
Animations and Visualization Transitions
Area Graphs
Aspect Ratio, Space and width
Axis
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Citations or References
Clustering
Colors
Combination Plots
Confidence Intervals
Contours
Correlation Graphs
DOE
Data
Data Context
Data Customizer
Data Faceting
Data Filters
Data Point Attributes
Data Ratio Reference
Data Selection
Data Sorting
Data Table
Data Table/Filter
Data Time Series
Data Transformation
Data UI Widgets
Debug
Decorations
Dendrograms
Density Plots
Dotplot Graphs
Effect
Error Bars
Events
Fish Graphs
Fit Lines
Foreground and Background
Gantt Charts
General
General Attributes
Genome Browser
Genome Browser Features
Genome Browser Features: General parameters used in genome browser features
Genome Browser Sequences
Genome Browser Sequences: General parameters used in genome browser sequeces
Genome Browser Tracks
Genome Browser Tracks: General parameters used in genome browser tracks
Gradients
Graph Metadata
Grey Out
HTML Widgets
Heatmap Color Indicators
Heatmap Graphs
Hierarchy
Histograms
Ideograms
Images
Kaplan Meier Plots
LLM
Legends
Line Graphs
Lines
Loess
Lollipop Graphs
Manhattan Plots
Manhattan and ManhattanCNV Plots
Maps
Maps Albers
Maps Leaflet
Maps Orthographic
Margins
Meter Graphs
Missing Data
Motion Charts
Network Algorithm Parameters
Network Cola Algorithm Parameters
Network Communities
Network Graphs
Network Node and Edge Attributes
Oncoprint Graphs
Overlays
Parallel Coordinates Graphs
Pie Charts
Plot and Panel Area
Plot and Panel Areas
Plot area
Print
Quantile Regression Plots
R
R-Axis
Random
Regression
Remote Procedures
Ridgeline Plots
Samples
Sankey Diagrams
Scatter Plot Matrix
Scatter Plots
Shadows
Shapes
Stream Plots
Swimmer Graphs
Tag Cloud
Text
Text Placement
Time Series
Titles and Subtitles
Transparency
Treemap Graphs
Trees
UpSet Plots
Variables
Venn Diagrams
Violin Plots
Visium Plots
X-Axis
Y-Axis
Z-Axis
Zooming, Panning and Resizing
cxplot
false
UpSet Plots : General parameters for upset
#
nUpSetIntercepts
Number of intercepts to draw
Type:
integer
Default:
40
Used in:
Heatmap
#
nUpSets
Number of sets to draw
Type:
integer
Default:
5
Used in:
Heatmap
#
upSetIntercepts
Array containing the names of the intercepts to include. Sets must be separated by &&
Type:
array
Default:
[]
Used in:
Heatmap
#
upSetSets
Array containing the names of the sets to include
Type:
array
Default:
[]
Used in:
Heatmap
#
upsetLineSizeFactor
Adjust width of lines in matrix plot
Type:
float
Default:
1
Used in:
Heatmap
#
upsetMainBarColor
Color for the the main bar plot
Type:
color
Default:
rgb(59,59,59)
Used in:
Heatmap
#
upsetMatrixColor
Color for the the intersection points
Type:
color
Default:
rgb(59,59,59)
Used in:
Heatmap
#
upsetMatrixDotAlpha
Transparency of the empty intersections points in the matrix
Type:
float
Default:
0.2
Used in:
Heatmap
#
upsetMatrixPlotBarRatio
Ratio between matrix plot and main bar plot
Type:
float
Default:
0.7
Used in:
Heatmap
#
upsetPointSizeFactor
Adjust the size of points in matrix plot
Type:
float
Default:
1
Used in:
Heatmap
#
upsetSetsBarColor
Color for the set bar plot
Type:
color
Default:
rgb(59,59,59)
Used in:
Heatmap
#
upsetShadeAlpha
Transparency of shading in matrix
Type:
float
Default:
0.1
Used in:
Heatmap
#
upsetShadeColor
Color for the row shading in matrix
Type:
color
Default:
rgb(159,159,159)
Used in:
Heatmap
On This Page
nUpSetIntercepts
nUpSets
upSetIntercepts
upSetSets
upsetLineSizeFactor
upsetMainBarColor
upsetMatrixColor
upsetMatrixDotAlpha
upsetMatrixPlotBarRatio
upsetPointSizeFactor
upsetSetsBarColor
upsetShadeAlpha
upsetShadeColor
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