Heatmap Chart

A heatmap is a graphical representation of data where the individual values contained in a matrix are represented as colors. It is a bit like looking a data table from above. It is really useful to display a general view of numerical data, not to extract specific data point.



Color Themes


{
   "x" : {
      "Dose" : [0,0,0,0,0,5,5,10,10,15,15,20,20,25,25,5,5,10,10,15,15,20,20,25,25],
      "Dose-Type" : ["","","","","","Dose1","Dose1","Dose2","Dose2","Dose3","Dose3","Dose4","Dose4","Dose5","Dose5","Dose1","Dose1","Dose2","Dose2","Dose3","Dose3","Dose4","Dose4","Dose5","Dose5"],
      "Site" : ["Site1","Site1","Site1","Site1","Site1","Site2","Site2","Site2","Site2","Site2","Site2","Site2","Site2","Site2","Site2","Site3","Site3","Site3","Site3","Site3","Site3","Site3","Site3","Site3","Site3"],
      "Treatment" : ["Control","Control","Control","Control","Control","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB"]
   },
   "y" : {
      "data" : [
        [0.784,1.036,-0.641,1.606,2.208,3.879,0.333,2.265,-1.55,1.678,-0.639,-0.533,-0.078,0.433,0.391,1.013,0.928,0.812,0.072,3.564,0.47,1.836,0.351,3.139,-2.207],
        [0.222,0.716,0.993,-0.913,0.996,1.235,1.396,1.817,0.162,1.137,-0.126,1.56,1.003,1.86,0.43,0.696,0.777,1.6,0.175,2.423,0.044,3.881,-0.757,1.486,0.01],
        [0.486,2.15,-0.069,-0.468,0.402,0.725,-1.697,0.653,0.101,2.852,-0.27,0.414,-0.789,1.877,1.555,2.511,0.07,0.244,-0.41,2.345,2.401,-0.033,0.951,2.053,0.725],
        [-1.857,0.698,0.528,1.024,-0.035,2.181,-0.015,3.68,-1.13,-0.842,-1.759,1.784,-0.673,0.147,0.765,1.585,0.33,1.481,-0.362,1.456,-0.719,0.961,1.296,2.375,0.208],
        [-1.19,1.564,-2.407,0.642,-0.51,4.116,-0.379,0.786,1.508,3.119,1.011,1.54,1.184,1.821,-0.217,2.752,0.083,1.663,0.568,2.48,-1.207,1.222,0.296,1.055,1.078],
        [0.256,1.214,1.919,0.577,1.07,1.53,1.537,3.063,0.481,2.332,-1.466,0.167,0.428,1.401,-1.716,3.524,-0.822,1.073,-1.825,3.923,-0.542,2.637,-1.296,0.759,0.836],
        [-0.443,0.286,0.379,1.076,0.478,3.443,-0.287,1.206,-1.275,2.275,1.101,2.821,-0.638,0.922,-0.205,2.318,0.494,1.648,-0.585,1.963,-0.636,1.229,0.998,1.523,-1.01],
        [1.023,-0.417,0.865,1.645,0.324,1.94,0.122,-0.171,0.352,1.42,-0.436,3.076,0.434,0.986,-1.912,3.899,-0.212,0.716,0.782,0.534,1.939,1.374,-0.083,2.318,0.982],
        [-2.33,0.575,-0.543,-0.38,-2.153,1.717,-1.219,0.725,0.273,1.908,0.488,1.426,0.108,2.586,0.653,0.317,0.112,3.138,0.212,1.393,-0.506,1.87,0.332,1.893,1.017],
        [0.841,0.146,0.716,-0.233,-0.206,0.237,-0.307,2.499,-1.619,1.957,-0.12,3.058,0.511,3.598,0.286,0.922,0.164,0.782,-3.468,0.262,0.812,0.798,1.209,2.964,-1.47],
        [-0.099,1.666,-1.635,1.475,-0.186,0.781,-1.919,1.472,-0.109,1.588,-0.379,0.862,-1.455,2.386,2.783,0.98,-0.136,1.042,0.532,1.778,0.463,0.647,0.92,2.427,-0.07],
        [0.663,-1.411,-0.69,-0.216,-0.735,1.878,-0.073,1.568,-1.254,3.792,-0.345,3.384,0.206,1.572,0.134,2.035,-0.26,2.42,0.437,2.164,-0.063,5.027,-0.166,3.878,-1.313],
        [-0.647,-1.152,3.437,-0.3,0.358,1.766,0.067,0.149,-1.005,1.191,-1.299,1.326,-2.378,1.8,-0.858,2.019,-1.357,2.278,-0.711,2.196,-0.243,3.326,-0.215,2.25,-0.504],
        [-0.264,-1.328,1.228,1.247,0.692,1.763,-0.978,2.781,-0.058,2.223,0.796,2.414,-1.834,3.203,0.459,2.914,0.375,3.309,0.946,0.943,-1.365,2.452,0.474,0.503,0.025],
        [0.253,-0.529,-0.429,-1.111,0.398,2.332,-1.334,2.202,-0.585,1.885,0.398,1.788,0.972,2.025,-0.835,0.622,0.001,0.837,-0.776,2.257,0.682,1.304,2.407,4.038,0.518],
        [-0.876,-1.41,0.538,-1.04,-0.717,-0.889,3.129,1.202,3.398,0.398,3.857,1.372,4.813,-1.311,4.029,-0.432,3.01,0.756,4.688,0.294,4.61,0.859,4.498,1.794,3.319],
        [-0.363,0.042,-0.253,-0.076,-1.27,-0.904,2.931,-0.119,2.669,-0.165,6.023,-0.65,2.031,1.424,2.844,-1.019,4.062,-0.025,2.637,-0.317,4.228,-0.142,3.013,0.611,3.74],
        [-1.674,-0.318,-0.726,-1.271,1.753,-1.678,3.341,-1.772,3.814,-1.391,2.622,0.677,3.307,-0.92,3.545,0.305,2.808,0.836,4.532,-0.378,4.87,-0.044,4.061,1.684,5.486],
        [-0.288,0.165,-0.468,1.219,-3.353,-0.578,3.414,-0.674,4.755,0.033,4.025,0.44,4.186,1.136,2.505,0.436,3.293,-0.868,4.746,-0.545,3.666,-0.295,3.206,-0.966,4.678],
        [-0.558,-0.855,-1.114,-0.623,0.368,-0.182,4.37,0.563,3.75,0.189,2.717,-1.708,5.274,0.741,2.537,-1.583,2.832,-1.515,3.829,0.358,5.306,0.388,3.284,0.661,3.804],
        [1.693,-1.53,0.057,-0.217,0.511,0.309,3.998,0.925,1.045,0.379,2.024,0.331,3.612,0.151,5.808,-1.429,3.402,-0.297,4.692,-0.439,4.521,-0.816,4.693,0.323,2.869],
        [-0.234,1.999,-1.603,-0.292,-0.91,-0.766,6.167,1.242,4.219,-1.291,6.974,-0.443,4.039,0.72,3.808,1.465,2.86,2.736,4.675,-0.554,3.091,0.057,4.311,-0.005,2.605],
        [0.529,-1.721,2.207,-0.873,-1.364,1.139,3.146,1.277,3.963,-0.234,4.581,-1.266,3.743,-0.84,3.682,-0.566,4.249,0.599,4.202,0.125,4.136,-0.67,3.433,-0.954,3.97],
        [-0.529,0.375,0.204,-0.529,1.001,0.244,3.922,-0.904,3.479,-0.926,4.171,-0.047,2.158,0.467,2.277,0.429,3.903,-1.013,3.182,0.73,3.318,-1.663,4.222,0.264,3.538],
        [2.302,-0.218,-1.184,-0.644,0.118,-1.35,4.497,1.262,5.131,-1.095,4.354,-1.364,4.376,-0.936,3.278,0.753,4.903,-2.193,3.336,0.722,3.92,-1.341,4.762,1.756,4.032],
        [0.957,1.309,-1.317,1.254,-0.397,0.004,3.34,1.233,4.681,-0.875,2.497,0.207,1.703,-0.614,3.171,-0.034,2.59,0.968,3.576,0.946,3.85,1.128,4.015,0.633,3.148],
        [-0.789,-1.139,0.066,0.418,0.366,-0.932,3.982,0.151,4.018,0.74,5.374,0.067,6.07,1.178,6.316,1.948,3.389,0.383,5.084,-0.251,3.874,-0.715,3.101,-0.172,4.867],
        [-0.26,-0.005,-0.12,-0.422,0.629,1.242,3.954,-0.027,4.352,-0.074,4.369,0.196,4.847,-0.763,3.042,-1.643,3.952,-1.358,4.105,-0.257,4.168,0.047,1.782,-0.585,5.465],
        [1.882,0.869,-1.305,1.095,1.002,-0.897,3.248,1.113,5.83,0.298,4.811,-0.128,3.263,0.186,4.244,1.314,2.832,0.222,3.899,-1.279,4.133,-1.523,4.49,0.966,4.658],
        [-1.052,0.429,0.646,0.642,1.037,-1.046,1.724,-0.698,5.316,-0.403,2.821,-0.108,5.52,-0.352,3.298,-0.716,2.672,1.499,3.919,0.202,3.409,0.841,5.47,1.225,1.988],
        [-1.862,-0.589,0.205,1.281,-1.256,0.924,4.189,-1.219,3.137,0.142,5.869,0.529,2.138,-0.034,3.921,-1.097,5.402,1.468,5.034,0.088,3.055,1.587,3.374,0.377,2.939],
        [-0.315,-0.369,0.634,0.495,-1.059,-0.481,1.329,1.105,5.3,0.135,6.515,0.001,4.161,1.686,4.747,-0.911,3.24,-1.461,4.64,0.698,5.006,-1.072,4.608,-0.317,5.208],
        [0.558,0.793,-1.713,0.055,2.242,0.588,3.785,2.949,2.175,2.055,3.328,0.236,3.549,-0.009,1.477,0.538,3.116,-0.621,5.203,0.736,3.606,-0.313,4.402,-1.039,3.894],
        [-1.332,-1.134,0.153,0.66,1.764,-0.588,3.417,-0.547,3.849,-1.521,3.332,0.88,5.449,0.179,4.596,0.626,4.006,0.33,2.969,-0.42,2.606,-0.485,4.581,-0.199,5.008],
        [0.29,0.228,0.117,-0.587,-2.116,0.188,4.009,0.551,3.127,0.682,3.858,-1.053,4.388,-1.46,1.468,0.434,4.221,0.782,2.992,0.056,5.223,-0.747,6.549,-0.959,3.714],
        [-0.015,-1.665,1.007,0.278,-0.091,1.919,3.861,-0.318,3.026,-1.642,5.379,2.097,4.396,0.802,3.66,0.544,2.156,0.87,4.044,0.3,4.422,-0.788,4.677,-0.215,4.643],
        [-0.984,0.915,0.944,-1.975,-1.717,0.16,4.748,1.521,4.091,-0.386,3.802,-1.134,5.701,-0.402,5.682,-0.987,4.281,0.844,3.427,1.368,3.358,-1.748,3.792,2.125,5.137],
        [-0.399,-0.613,2.211,0.238,2.799,0.687,5.522,0.534,5.233,-0.395,4.387,-1.733,4.494,-1.26,4.693,1.679,4.477,0.399,2.508,1.683,3.185,0.865,4.958,0.602,4.371],
        [1.205,-0.562,1.134,0.202,0.209,0.692,2.419,0.397,2.429,0.911,6.341,0.713,4.548,-0.688,3.947,0.439,4.69,-0.324,3.07,0.265,3.757,-1.535,5.434,-0.017,4.125],
        [-0.298,0.118,1.653,1.519,-0.821,-0.85,4.602,1.073,5.087,0.155,6.987,-0.716,2.912,0.581,2.112,-0.426,3.523,0.188,4.548,0.155,4.256,0.775,2.607,-0.697,5.338]
      ],
      "smps" : ["S1","S2","S3","S4","S5","S6","S7","S8","S9","S10","S11","S12","S13","S14","S15","S16","S17","S18","S19","S20","S21","S22","S23","S24","S25"],
      "vars" : ["V1","V2","V3","V4","V5","V6","V7","V8","V9","V10","V11","V12","V13","V14","V15","V16","V17","V18","V19","V20","V21","V22","V23","V24","V25","V26","V27","V28","V29","V30","V31","V32","V33","V34","V35","V36","V37","V38","V39","V40"]
   },
   "z" : {
      "Sens" : [1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4],
      "Type" : ["Pro","Tyr","Pho","Kin","Oth","Pro","Tyr","Pho","Kin","Oth","Pro","Tyr","Pho","Kin","Oth","Pro","Tyr","Pho","Kin","Oth","Pro","Tyr","Pho","Kin","Oth","Pro","Tyr","Pho","Kin","Oth","Pro","Tyr","Pho","Kin","Oth","Pro","Tyr","Pho","Kin","Oth"]
   }
}
{
   "colorSpectrum" : ["navy","white","firebrick3"],
   "graphType" : "Heatmap",
   "title" : "Simple Heatmap"
}
library(canvasXpress)
y=read.table("https://www.canvasxpress.org/data/cX-heatmapR-dat.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE)
x=read.table("https://www.canvasxpress.org/data/cX-heatmapR-smp.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE)
z=read.table("https://www.canvasxpress.org/data/cX-heatmapR-var.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE)
canvasXpress(
  data=y,
  smpAnnot=x,
  varAnnot=z,
  colorSpectrum=list("navy", "white", "firebrick3"),
  graphType="Heatmap",
  title="Simple Heatmap"
)