Enhanced Heatmap with Custom Color Breaks
Heatmap graphs provide a visual representation of data using color variations to represent different values. They are incredibly useful for identifying patterns, trends, and outliers in datasets. Commonly used in various fields, from geographical analysis to website usability studies, heatmaps offer an intuitive way to understand complex data. Creating effective heatmaps involves selecting the appropriate color scheme and scaling to highlight meaningful differences. Interactive heatmaps further enhance analysis by allowing users to zoom, pan, and explore data points in detail. This makes them powerful tools for data-driven decision making across numerous disciplines.
<html>
<head>
<!-- Include the CanvasXpress library in your HTML file -->
<link rel="stylesheet" href="https://www.canvasxpress.org/dist/canvasXpress.css" type="text/css"/>
<script src="https://www.canvasxpress.org/dist/canvasXpress.min.js"></script>
</head>
<body>
<!-- Create a canvas element for the chart with the desired dimensions -->
<div>
<canvas id="canvasId" width="600" height="600"></canvas>
</div>
<!-- Create a script to initialize the chart -->
<script>
// Create the data for the graph
var data = {
"x" : {
"Dose" : [0,0,0,0,0,5,5,10,10,15,15,20,20,25,25,5,5,10,10,15,15,20,20,25,25],
"Dose-Type" : ["","","","","","Dose1","Dose1","Dose2","Dose2","Dose3","Dose3","Dose4","Dose4","Dose5","Dose5","Dose1","Dose1","Dose2","Dose2","Dose3","Dose3","Dose4","Dose4","Dose5","Dose5"],
"Site" : ["Site1","Site1","Site1","Site1","Site1","Site2","Site2","Site2","Site2","Site2","Site2","Site2","Site2","Site2","Site2","Site3","Site3","Site3","Site3","Site3","Site3","Site3","Site3","Site3","Site3"],
"Treatment" : ["Control","Control","Control","Control","Control","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB","TreatmentA","TreatmentB"]
},
"y" : {
"data" : [
[0.784,1.036,-0.641,1.606,2.208,3.879,0.333,2.265,-1.55,1.678,-0.639,-0.533,-0.078,0.433,0.391,1.013,0.928,0.812,0.072,3.564,0.47,1.836,0.351,3.139,-2.207],
[0.222,0.716,0.993,-0.913,0.996,1.235,1.396,1.817,0.162,1.137,-0.126,1.56,1.003,1.86,0.43,0.696,0.777,1.6,0.175,2.423,0.044,3.881,-0.757,1.486,0.01],
[0.486,2.15,-0.069,-0.468,0.402,0.725,-1.697,0.653,0.101,2.852,-0.27,0.414,-0.789,1.877,1.555,2.511,0.07,0.244,-0.41,2.345,2.401,-0.033,0.951,2.053,0.725],
[-1.857,0.698,0.528,1.024,-0.035,2.181,-0.015,3.68,-1.13,-0.842,-1.759,1.784,-0.673,0.147,0.765,1.585,0.33,1.481,-0.362,1.456,-0.719,0.961,1.296,2.375,0.208],
[-1.19,1.564,-2.407,0.642,-0.51,4.116,-0.379,0.786,1.508,3.119,1.011,1.54,1.184,1.821,-0.217,2.752,0.083,1.663,0.568,2.48,-1.207,1.222,0.296,1.055,1.078],
[0.256,1.214,1.919,0.577,1.07,1.53,1.537,3.063,0.481,2.332,-1.466,0.167,0.428,1.401,-1.716,3.524,-0.822,1.073,-1.825,3.923,-0.542,2.637,-1.296,0.759,0.836],
[-0.443,0.286,0.379,1.076,0.478,3.443,-0.287,1.206,-1.275,2.275,1.101,2.821,-0.638,0.922,-0.205,2.318,0.494,1.648,-0.585,1.963,-0.636,1.229,0.998,1.523,-1.01],
[1.023,-0.417,0.865,1.645,0.324,1.94,0.122,-0.171,0.352,1.42,-0.436,3.076,0.434,0.986,-1.912,3.899,-0.212,0.716,0.782,0.534,1.939,1.374,-0.083,2.318,0.982],
[-2.33,0.575,-0.543,-0.38,-2.153,1.717,-1.219,0.725,0.273,1.908,0.488,1.426,0.108,2.586,0.653,0.317,0.112,3.138,0.212,1.393,-0.506,1.87,0.332,1.893,1.017],
[0.841,0.146,0.716,-0.233,-0.206,0.237,-0.307,2.499,-1.619,1.957,-0.12,3.058,0.511,3.598,0.286,0.922,0.164,0.782,-3.468,0.262,0.812,0.798,1.209,2.964,-1.47],
[-0.099,1.666,-1.635,1.475,-0.186,0.781,-1.919,1.472,-0.109,1.588,-0.379,0.862,-1.455,2.386,2.783,0.98,-0.136,1.042,0.532,1.778,0.463,0.647,0.92,2.427,-0.07],
[0.663,-1.411,-0.69,-0.216,-0.735,1.878,-0.073,1.568,-1.254,3.792,-0.345,3.384,0.206,1.572,0.134,2.035,-0.26,2.42,0.437,2.164,-0.063,5.027,-0.166,3.878,-1.313],
[-0.647,-1.152,3.437,-0.3,0.358,1.766,0.067,0.149,-1.005,1.191,-1.299,1.326,-2.378,1.8,-0.858,2.019,-1.357,2.278,-0.711,2.196,-0.243,3.326,-0.215,2.25,-0.504],
[-0.264,-1.328,1.228,1.247,0.692,1.763,-0.978,2.781,-0.058,2.223,0.796,2.414,-1.834,3.203,0.459,2.914,0.375,3.309,0.946,0.943,-1.365,2.452,0.474,0.503,0.025],
[0.253,-0.529,-0.429,-1.111,0.398,2.332,-1.334,2.202,-0.585,1.885,0.398,1.788,0.972,2.025,-0.835,0.622,0.001,0.837,-0.776,2.257,0.682,1.304,2.407,4.038,0.518],
[-0.876,-1.41,0.538,-1.04,-0.717,-0.889,3.129,1.202,3.398,0.398,3.857,1.372,4.813,-1.311,4.029,-0.432,3.01,0.756,4.688,0.294,4.61,0.859,4.498,1.794,3.319],
[-0.363,0.042,-0.253,-0.076,-1.27,-0.904,2.931,-0.119,2.669,-0.165,6.023,-0.65,2.031,1.424,2.844,-1.019,4.062,-0.025,2.637,-0.317,4.228,-0.142,3.013,0.611,3.74],
[-1.674,-0.318,-0.726,-1.271,1.753,-1.678,3.341,-1.772,3.814,-1.391,2.622,0.677,3.307,-0.92,3.545,0.305,2.808,0.836,4.532,-0.378,4.87,-0.044,4.061,1.684,5.486],
[-0.288,0.165,-0.468,1.219,-3.353,-0.578,3.414,-0.674,4.755,0.033,4.025,0.44,4.186,1.136,2.505,0.436,3.293,-0.868,4.746,-0.545,3.666,-0.295,3.206,-0.966,4.678],
[-0.558,-0.855,-1.114,-0.623,0.368,-0.182,4.37,0.563,3.75,0.189,2.717,-1.708,5.274,0.741,2.537,-1.583,2.832,-1.515,3.829,0.358,5.306,0.388,3.284,0.661,3.804],
[1.693,-1.53,0.057,-0.217,0.511,0.309,3.998,0.925,1.045,0.379,2.024,0.331,3.612,0.151,5.808,-1.429,3.402,-0.297,4.692,-0.439,4.521,-0.816,4.693,0.323,2.869],
[-0.234,1.999,-1.603,-0.292,-0.91,-0.766,6.167,1.242,4.219,-1.291,6.974,-0.443,4.039,0.72,3.808,1.465,2.86,2.736,4.675,-0.554,3.091,0.057,4.311,-0.005,2.605],
[0.529,-1.721,2.207,-0.873,-1.364,1.139,3.146,1.277,3.963,-0.234,4.581,-1.266,3.743,-0.84,3.682,-0.566,4.249,0.599,4.202,0.125,4.136,-0.67,3.433,-0.954,3.97],
[-0.529,0.375,0.204,-0.529,1.001,0.244,3.922,-0.904,3.479,-0.926,4.171,-0.047,2.158,0.467,2.277,0.429,3.903,-1.013,3.182,0.73,3.318,-1.663,4.222,0.264,3.538],
[2.302,-0.218,-1.184,-0.644,0.118,-1.35,4.497,1.262,5.131,-1.095,4.354,-1.364,4.376,-0.936,3.278,0.753,4.903,-2.193,3.336,0.722,3.92,-1.341,4.762,1.756,4.032],
[0.957,1.309,-1.317,1.254,-0.397,0.004,3.34,1.233,4.681,-0.875,2.497,0.207,1.703,-0.614,3.171,-0.034,2.59,0.968,3.576,0.946,3.85,1.128,4.015,0.633,3.148],
[-0.789,-1.139,0.066,0.418,0.366,-0.932,3.982,0.151,4.018,0.74,5.374,0.067,6.07,1.178,6.316,1.948,3.389,0.383,5.084,-0.251,3.874,-0.715,3.101,-0.172,4.867],
[-0.26,-0.005,-0.12,-0.422,0.629,1.242,3.954,-0.027,4.352,-0.074,4.369,0.196,4.847,-0.763,3.042,-1.643,3.952,-1.358,4.105,-0.257,4.168,0.047,1.782,-0.585,5.465],
[1.882,0.869,-1.305,1.095,1.002,-0.897,3.248,1.113,5.83,0.298,4.811,-0.128,3.263,0.186,4.244,1.314,2.832,0.222,3.899,-1.279,4.133,-1.523,4.49,0.966,4.658],
[-1.052,0.429,0.646,0.642,1.037,-1.046,1.724,-0.698,5.316,-0.403,2.821,-0.108,5.52,-0.352,3.298,-0.716,2.672,1.499,3.919,0.202,3.409,0.841,5.47,1.225,1.988],
[-1.862,-0.589,0.205,1.281,-1.256,0.924,4.189,-1.219,3.137,0.142,5.869,0.529,2.138,-0.034,3.921,-1.097,5.402,1.468,5.034,0.088,3.055,1.587,3.374,0.377,2.939],
[-0.315,-0.369,0.634,0.495,-1.059,-0.481,1.329,1.105,5.3,0.135,6.515,0.001,4.161,1.686,4.747,-0.911,3.24,-1.461,4.64,0.698,5.006,-1.072,4.608,-0.317,5.208],
[0.558,0.793,-1.713,0.055,2.242,0.588,3.785,2.949,2.175,2.055,3.328,0.236,3.549,-0.009,1.477,0.538,3.116,-0.621,5.203,0.736,3.606,-0.313,4.402,-1.039,3.894],
[-1.332,-1.134,0.153,0.66,1.764,-0.588,3.417,-0.547,3.849,-1.521,3.332,0.88,5.449,0.179,4.596,0.626,4.006,0.33,2.969,-0.42,2.606,-0.485,4.581,-0.199,5.008],
[0.29,0.228,0.117,-0.587,-2.116,0.188,4.009,0.551,3.127,0.682,3.858,-1.053,4.388,-1.46,1.468,0.434,4.221,0.782,2.992,0.056,5.223,-0.747,6.549,-0.959,3.714],
[-0.015,-1.665,1.007,0.278,-0.091,1.919,3.861,-0.318,3.026,-1.642,5.379,2.097,4.396,0.802,3.66,0.544,2.156,0.87,4.044,0.3,4.422,-0.788,4.677,-0.215,4.643],
[-0.984,0.915,0.944,-1.975,-1.717,0.16,4.748,1.521,4.091,-0.386,3.802,-1.134,5.701,-0.402,5.682,-0.987,4.281,0.844,3.427,1.368,3.358,-1.748,3.792,2.125,5.137],
[-0.399,-0.613,2.211,0.238,2.799,0.687,5.522,0.534,5.233,-0.395,4.387,-1.733,4.494,-1.26,4.693,1.679,4.477,0.399,2.508,1.683,3.185,0.865,4.958,0.602,4.371],
[1.205,-0.562,1.134,0.202,0.209,0.692,2.419,0.397,2.429,0.911,6.341,0.713,4.548,-0.688,3.947,0.439,4.69,-0.324,3.07,0.265,3.757,-1.535,5.434,-0.017,4.125],
[-0.298,0.118,1.653,1.519,-0.821,-0.85,4.602,1.073,5.087,0.155,6.987,-0.716,2.912,0.581,2.112,-0.426,3.523,0.188,4.548,0.155,4.256,0.775,2.607,-0.697,5.338]
],
"smps" : ["S1","S2","S3","S4","S5","S6","S7","S8","S9","S10","S11","S12","S13","S14","S15","S16","S17","S18","S19","S20","S21","S22","S23","S24","S25"],
"vars" : ["V1","V2","V3","V4","V5","V6","V7","V8","V9","V10","V11","V12","V13","V14","V15","V16","V17","V18","V19","V20","V21","V22","V23","V24","V25","V26","V27","V28","V29","V30","V31","V32","V33","V34","V35","V36","V37","V38","V39","V40"]
},
"z" : {
"Lab" : ["A","A","A","A","A","A","A","A","A","A","A","A","A","A","A","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B","B"],
"Sens" : [1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4,1,2,3,4],
"Type" : ["Pro","Tyr","Pho","Kin","Oth","Pro","Tyr","Pho","Kin","Oth","Pro","Tyr","Pho","Kin","Oth","Pro","Tyr","Pho","Kin","Oth","Pro","Tyr","Pho","Kin","Oth","Pro","Tyr","Pho","Kin","Oth","Pro","Tyr","Pho","Kin","Oth","Pro","Tyr","Pho","Kin","Oth"]
}
}
// Create the configuration for the graph
var config = {
"colorSpectrum" : ["blue","white","red"],
"colorSpectrumBreaks" : [1,2,10],
"graphType" : "Heatmap",
"heatmapCellBoxColor" : "rgb(255,255,255)",
"samplesClustered" : true,
"showSmpDendrogram" : false,
"showVarDendrogram" : false,
"title" : "Custom color breaks",
"variablesClustered" : true,
"xAxis" : ["V1","V2","V3","V4","V5","V6","V7","V8","V9","V10","V11","V12","V13","V14","V15","V16","V17","V18","V19","V20","V21","V22","V23","V24","V25","V26","V27","V28","V29","V30","V31","V32","V33","V34","V35","V36","V37","V38","V39","V40"]
}
// Event used to create graph (optional)
var events = false
// Call the CanvasXpress function to create the graph
var cX = new CanvasXpress("canvasId", data, config, events);
</script>
</body>
</html>
library(canvasXpress)
y=read.table("https://www.canvasxpress.org/data/r/cX-heatmapR-dat.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE)
x=read.table("https://www.canvasxpress.org/data/r/cX-heatmapR-smp.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE)
z=read.table("https://www.canvasxpress.org/data/r/cX-heatmapR-var.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE)
canvasXpress(
data=y,
smpAnnot=x,
varAnnot=z,
colorSpectrum=list("blue", "white", "red"),
colorSpectrumBreaks=list(1, 2, 10),
graphType="Heatmap",
heatmapCellBoxColor="rgb(255,255,255)",
samplesClustered=TRUE,
showSmpDendrogram=FALSE,
showVarDendrogram=FALSE,
title="Custom color breaks",
variablesClustered=TRUE,
xAxis=list("V1", "V2", "V3", "V4", "V5", "V6", "V7", "V8", "V9", "V10", "V11", "V12", "V13", "V14", "V15", "V16", "V17", "V18", "V19", "V20", "V21", "V22", "V23", "V24", "V25", "V26", "V27", "V28", "V29", "V30", "V31", "V32", "V33", "V34", "V35", "V36", "V37", "V38", "V39", "V40")
)
from canvasxpress.canvas import CanvasXpress
from canvasxpress.plot import show_in_browser
if __name__ == "__main__":
# Define the chart with its data and configuration
chart: CanvasXpress = CanvasXpress(
render_to = "heatmap3",
data = {
"x": {
"Dose": [0, 0, 0, 0, 0, 5, 5, 10, 10, 15, 15, 20, 20, 25, 25, 5, 5, 10, 10, 15, 15, 20, 20, 25, 25],
"Dose-Type": ["", "", "", "", "", "Dose1", "Dose1", "Dose2", "Dose2", "Dose3", "Dose3", "Dose4", "Dose4", "Dose5", "Dose5", "Dose1", "Dose1", "Dose2", "Dose2", "Dose3", "Dose3", "Dose4", "Dose4", "Dose5", "Dose5"],
"Site": ["Site1", "Site1", "Site1", "Site1", "Site1", "Site2", "Site2", "Site2", "Site2", "Site2", "Site2", "Site2", "Site2", "Site2", "Site2", "Site3", "Site3", "Site3", "Site3", "Site3", "Site3", "Site3", "Site3", "Site3", "Site3"],
"Treatment": ["Control", "Control", "Control", "Control", "Control", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB"]
},
"y": {
"data": [
[0.784, 1.036, -0.641, 1.606, 2.208, 3.879, 0.333, 2.265, -1.55, 1.678, -0.639, -0.533, -0.078, 0.433, 0.391, 1.013, 0.928, 0.812, 0.072, 3.564, 0.47, 1.836, 0.351, 3.139, -2.207],
[0.222, 0.716, 0.993, -0.913, 0.996, 1.235, 1.396, 1.817, 0.162, 1.137, -0.126, 1.56, 1.003, 1.86, 0.43, 0.696, 0.777, 1.6, 0.175, 2.423, 0.044, 3.881, -0.757, 1.486, 0.01],
[0.486, 2.15, -0.069, -0.468, 0.402, 0.725, -1.697, 0.653, 0.101, 2.852, -0.27, 0.414, -0.789, 1.877, 1.555, 2.511, 0.07, 0.244, -0.41, 2.345, 2.401, -0.033, 0.951, 2.053, 0.725],
[-1.857, 0.698, 0.528, 1.024, -0.035, 2.181, -0.015, 3.68, -1.13, -0.842, -1.759, 1.784, -0.673, 0.147, 0.765, 1.585, 0.33, 1.481, -0.362, 1.456, -0.719, 0.961, 1.296, 2.375, 0.208],
[-1.19, 1.564, -2.407, 0.642, -0.51, 4.116, -0.379, 0.786, 1.508, 3.119, 1.011, 1.54, 1.184, 1.821, -0.217, 2.752, 0.083, 1.663, 0.568, 2.48, -1.207, 1.222, 0.296, 1.055, 1.078],
[0.256, 1.214, 1.919, 0.577, 1.07, 1.53, 1.537, 3.063, 0.481, 2.332, -1.466, 0.167, 0.428, 1.401, -1.716, 3.524, -0.822, 1.073, -1.825, 3.923, -0.542, 2.637, -1.296, 0.759, 0.836],
[-0.443, 0.286, 0.379, 1.076, 0.478, 3.443, -0.287, 1.206, -1.275, 2.275, 1.101, 2.821, -0.638, 0.922, -0.205, 2.318, 0.494, 1.648, -0.585, 1.963, -0.636, 1.229, 0.998, 1.523, -1.01],
[1.023, -0.417, 0.865, 1.645, 0.324, 1.94, 0.122, -0.171, 0.352, 1.42, -0.436, 3.076, 0.434, 0.986, -1.912, 3.899, -0.212, 0.716, 0.782, 0.534, 1.939, 1.374, -0.083, 2.318, 0.982],
[-2.33, 0.575, -0.543, -0.38, -2.153, 1.717, -1.219, 0.725, 0.273, 1.908, 0.488, 1.426, 0.108, 2.586, 0.653, 0.317, 0.112, 3.138, 0.212, 1.393, -0.506, 1.87, 0.332, 1.893, 1.017],
[0.841, 0.146, 0.716, -0.233, -0.206, 0.237, -0.307, 2.499, -1.619, 1.957, -0.12, 3.058, 0.511, 3.598, 0.286, 0.922, 0.164, 0.782, -3.468, 0.262, 0.812, 0.798, 1.209, 2.964, -1.47],
[-0.099, 1.666, -1.635, 1.475, -0.186, 0.781, -1.919, 1.472, -0.109, 1.588, -0.379, 0.862, -1.455, 2.386, 2.783, 0.98, -0.136, 1.042, 0.532, 1.778, 0.463, 0.647, 0.92, 2.427, -0.07],
[0.663, -1.411, -0.69, -0.216, -0.735, 1.878, -0.073, 1.568, -1.254, 3.792, -0.345, 3.384, 0.206, 1.572, 0.134, 2.035, -0.26, 2.42, 0.437, 2.164, -0.063, 5.027, -0.166, 3.878, -1.313],
[-0.647, -1.152, 3.437, -0.3, 0.358, 1.766, 0.067, 0.149, -1.005, 1.191, -1.299, 1.326, -2.378, 1.8, -0.858, 2.019, -1.357, 2.278, -0.711, 2.196, -0.243, 3.326, -0.215, 2.25, -0.504],
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[-0.876, -1.41, 0.538, -1.04, -0.717, -0.889, 3.129, 1.202, 3.398, 0.398, 3.857, 1.372, 4.813, -1.311, 4.029, -0.432, 3.01, 0.756, 4.688, 0.294, 4.61, 0.859, 4.498, 1.794, 3.319],
[-0.363, 0.042, -0.253, -0.076, -1.27, -0.904, 2.931, -0.119, 2.669, -0.165, 6.023, -0.65, 2.031, 1.424, 2.844, -1.019, 4.062, -0.025, 2.637, -0.317, 4.228, -0.142, 3.013, 0.611, 3.74],
[-1.674, -0.318, -0.726, -1.271, 1.753, -1.678, 3.341, -1.772, 3.814, -1.391, 2.622, 0.677, 3.307, -0.92, 3.545, 0.305, 2.808, 0.836, 4.532, -0.378, 4.87, -0.044, 4.061, 1.684, 5.486],
[-0.288, 0.165, -0.468, 1.219, -3.353, -0.578, 3.414, -0.674, 4.755, 0.033, 4.025, 0.44, 4.186, 1.136, 2.505, 0.436, 3.293, -0.868, 4.746, -0.545, 3.666, -0.295, 3.206, -0.966, 4.678],
[-0.558, -0.855, -1.114, -0.623, 0.368, -0.182, 4.37, 0.563, 3.75, 0.189, 2.717, -1.708, 5.274, 0.741, 2.537, -1.583, 2.832, -1.515, 3.829, 0.358, 5.306, 0.388, 3.284, 0.661, 3.804],
[1.693, -1.53, 0.057, -0.217, 0.511, 0.309, 3.998, 0.925, 1.045, 0.379, 2.024, 0.331, 3.612, 0.151, 5.808, -1.429, 3.402, -0.297, 4.692, -0.439, 4.521, -0.816, 4.693, 0.323, 2.869],
[-0.234, 1.999, -1.603, -0.292, -0.91, -0.766, 6.167, 1.242, 4.219, -1.291, 6.974, -0.443, 4.039, 0.72, 3.808, 1.465, 2.86, 2.736, 4.675, -0.554, 3.091, 0.057, 4.311, -0.005, 2.605],
[0.529, -1.721, 2.207, -0.873, -1.364, 1.139, 3.146, 1.277, 3.963, -0.234, 4.581, -1.266, 3.743, -0.84, 3.682, -0.566, 4.249, 0.599, 4.202, 0.125, 4.136, -0.67, 3.433, -0.954, 3.97],
[-0.529, 0.375, 0.204, -0.529, 1.001, 0.244, 3.922, -0.904, 3.479, -0.926, 4.171, -0.047, 2.158, 0.467, 2.277, 0.429, 3.903, -1.013, 3.182, 0.73, 3.318, -1.663, 4.222, 0.264, 3.538],
[2.302, -0.218, -1.184, -0.644, 0.118, -1.35, 4.497, 1.262, 5.131, -1.095, 4.354, -1.364, 4.376, -0.936, 3.278, 0.753, 4.903, -2.193, 3.336, 0.722, 3.92, -1.341, 4.762, 1.756, 4.032],
[0.957, 1.309, -1.317, 1.254, -0.397, 0.004, 3.34, 1.233, 4.681, -0.875, 2.497, 0.207, 1.703, -0.614, 3.171, -0.034, 2.59, 0.968, 3.576, 0.946, 3.85, 1.128, 4.015, 0.633, 3.148],
[-0.789, -1.139, 0.066, 0.418, 0.366, -0.932, 3.982, 0.151, 4.018, 0.74, 5.374, 0.067, 6.07, 1.178, 6.316, 1.948, 3.389, 0.383, 5.084, -0.251, 3.874, -0.715, 3.101, -0.172, 4.867],
[-0.26, -0.005, -0.12, -0.422, 0.629, 1.242, 3.954, -0.027, 4.352, -0.074, 4.369, 0.196, 4.847, -0.763, 3.042, -1.643, 3.952, -1.358, 4.105, -0.257, 4.168, 0.047, 1.782, -0.585, 5.465],
[1.882, 0.869, -1.305, 1.095, 1.002, -0.897, 3.248, 1.113, 5.83, 0.298, 4.811, -0.128, 3.263, 0.186, 4.244, 1.314, 2.832, 0.222, 3.899, -1.279, 4.133, -1.523, 4.49, 0.966, 4.658],
[-1.052, 0.429, 0.646, 0.642, 1.037, -1.046, 1.724, -0.698, 5.316, -0.403, 2.821, -0.108, 5.52, -0.352, 3.298, -0.716, 2.672, 1.499, 3.919, 0.202, 3.409, 0.841, 5.47, 1.225, 1.988],
[-1.862, -0.589, 0.205, 1.281, -1.256, 0.924, 4.189, -1.219, 3.137, 0.142, 5.869, 0.529, 2.138, -0.034, 3.921, -1.097, 5.402, 1.468, 5.034, 0.088, 3.055, 1.587, 3.374, 0.377, 2.939],
[-0.315, -0.369, 0.634, 0.495, -1.059, -0.481, 1.329, 1.105, 5.3, 0.135, 6.515, 0.001, 4.161, 1.686, 4.747, -0.911, 3.24, -1.461, 4.64, 0.698, 5.006, -1.072, 4.608, -0.317, 5.208],
[0.558, 0.793, -1.713, 0.055, 2.242, 0.588, 3.785, 2.949, 2.175, 2.055, 3.328, 0.236, 3.549, -0.009, 1.477, 0.538, 3.116, -0.621, 5.203, 0.736, 3.606, -0.313, 4.402, -1.039, 3.894],
[-1.332, -1.134, 0.153, 0.66, 1.764, -0.588, 3.417, -0.547, 3.849, -1.521, 3.332, 0.88, 5.449, 0.179, 4.596, 0.626, 4.006, 0.33, 2.969, -0.42, 2.606, -0.485, 4.581, -0.199, 5.008],
[0.29, 0.228, 0.117, -0.587, -2.116, 0.188, 4.009, 0.551, 3.127, 0.682, 3.858, -1.053, 4.388, -1.46, 1.468, 0.434, 4.221, 0.782, 2.992, 0.056, 5.223, -0.747, 6.549, -0.959, 3.714],
[-0.015, -1.665, 1.007, 0.278, -0.091, 1.919, 3.861, -0.318, 3.026, -1.642, 5.379, 2.097, 4.396, 0.802, 3.66, 0.544, 2.156, 0.87, 4.044, 0.3, 4.422, -0.788, 4.677, -0.215, 4.643],
[-0.984, 0.915, 0.944, -1.975, -1.717, 0.16, 4.748, 1.521, 4.091, -0.386, 3.802, -1.134, 5.701, -0.402, 5.682, -0.987, 4.281, 0.844, 3.427, 1.368, 3.358, -1.748, 3.792, 2.125, 5.137],
[-0.399, -0.613, 2.211, 0.238, 2.799, 0.687, 5.522, 0.534, 5.233, -0.395, 4.387, -1.733, 4.494, -1.26, 4.693, 1.679, 4.477, 0.399, 2.508, 1.683, 3.185, 0.865, 4.958, 0.602, 4.371],
[1.205, -0.562, 1.134, 0.202, 0.209, 0.692, 2.419, 0.397, 2.429, 0.911, 6.341, 0.713, 4.548, -0.688, 3.947, 0.439, 4.69, -0.324, 3.07, 0.265, 3.757, -1.535, 5.434, -0.017, 4.125],
[-0.298, 0.118, 1.653, 1.519, -0.821, -0.85, 4.602, 1.073, 5.087, 0.155, 6.987, -0.716, 2.912, 0.581, 2.112, -0.426, 3.523, 0.188, 4.548, 0.155, 4.256, 0.775, 2.607, -0.697, 5.338]
],
"smps": ["S1", "S2", "S3", "S4", "S5", "S6", "S7", "S8", "S9", "S10", "S11", "S12", "S13", "S14", "S15", "S16", "S17", "S18", "S19", "S20", "S21", "S22", "S23", "S24", "S25"],
"vars": ["V1", "V2", "V3", "V4", "V5", "V6", "V7", "V8", "V9", "V10", "V11", "V12", "V13", "V14", "V15", "V16", "V17", "V18", "V19", "V20", "V21", "V22", "V23", "V24", "V25", "V26", "V27", "V28", "V29", "V30", "V31", "V32", "V33", "V34", "V35", "V36", "V37", "V38", "V39", "V40"]
},
"z": {
"Lab": ["A", "A", "A", "A", "A", "A", "A", "A", "A", "A", "A", "A", "A", "A", "A", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B"],
"Sens": [1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4],
"Type": ["Pro", "Tyr", "Pho", "Kin", "Oth", "Pro", "Tyr", "Pho", "Kin", "Oth", "Pro", "Tyr", "Pho", "Kin", "Oth", "Pro", "Tyr", "Pho", "Kin", "Oth", "Pro", "Tyr", "Pho", "Kin", "Oth", "Pro", "Tyr", "Pho", "Kin", "Oth", "Pro", "Tyr", "Pho", "Kin", "Oth", "Pro", "Tyr", "Pho", "Kin", "Oth"]
}
},
config = {
"colorSpectrum": ["blue", "white", "red"],
"colorSpectrumBreaks": [1, 2, 10],
"graphType": "Heatmap",
"heatmapCellBoxColor": "rgb(255,255,255)",
"samplesClustered": True,
"showSmpDendrogram": False,
"showVarDendrogram": False,
"title": "Custom color breaks",
"variablesClustered": True,
"xAxis": ["V1", "V2", "V3", "V4", "V5", "V6", "V7", "V8", "V9", "V10", "V11", "V12", "V13", "V14", "V15", "V16", "V17", "V18", "V19", "V20", "V21", "V22", "V23", "V24", "V25", "V26", "V27", "V28", "V29", "V30", "V31", "V32", "V33", "V34", "V35", "V36", "V37", "V38", "V39", "V40"]
},
width = 600,
height = 600
)
# Display the chart in its own Web page
show_in_browser(chart)
Run this notebook:
from canvasxpress.canvas import CanvasXpress
from canvasxpress.plot import graph
graph(
CanvasXpress(
render_to = "heatmap3",
data = {
"x": {
"Dose": [0, 0, 0, 0, 0, 5, 5, 10, 10, 15, 15, 20, 20, 25, 25, 5, 5, 10, 10, 15, 15, 20, 20, 25, 25],
"Dose-Type": ["", "", "", "", "", "Dose1", "Dose1", "Dose2", "Dose2", "Dose3", "Dose3", "Dose4", "Dose4", "Dose5", "Dose5", "Dose1", "Dose1", "Dose2", "Dose2", "Dose3", "Dose3", "Dose4", "Dose4", "Dose5", "Dose5"],
"Site": ["Site1", "Site1", "Site1", "Site1", "Site1", "Site2", "Site2", "Site2", "Site2", "Site2", "Site2", "Site2", "Site2", "Site2", "Site2", "Site3", "Site3", "Site3", "Site3", "Site3", "Site3", "Site3", "Site3", "Site3", "Site3"],
"Treatment": ["Control", "Control", "Control", "Control", "Control", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB", "TreatmentA", "TreatmentB"]
},
"y": {
"data": [
[0.784, 1.036, -0.641, 1.606, 2.208, 3.879, 0.333, 2.265, -1.55, 1.678, -0.639, -0.533, -0.078, 0.433, 0.391, 1.013, 0.928, 0.812, 0.072, 3.564, 0.47, 1.836, 0.351, 3.139, -2.207],
[0.222, 0.716, 0.993, -0.913, 0.996, 1.235, 1.396, 1.817, 0.162, 1.137, -0.126, 1.56, 1.003, 1.86, 0.43, 0.696, 0.777, 1.6, 0.175, 2.423, 0.044, 3.881, -0.757, 1.486, 0.01],
[0.486, 2.15, -0.069, -0.468, 0.402, 0.725, -1.697, 0.653, 0.101, 2.852, -0.27, 0.414, -0.789, 1.877, 1.555, 2.511, 0.07, 0.244, -0.41, 2.345, 2.401, -0.033, 0.951, 2.053, 0.725],
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[0.256, 1.214, 1.919, 0.577, 1.07, 1.53, 1.537, 3.063, 0.481, 2.332, -1.466, 0.167, 0.428, 1.401, -1.716, 3.524, -0.822, 1.073, -1.825, 3.923, -0.542, 2.637, -1.296, 0.759, 0.836],
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[1.023, -0.417, 0.865, 1.645, 0.324, 1.94, 0.122, -0.171, 0.352, 1.42, -0.436, 3.076, 0.434, 0.986, -1.912, 3.899, -0.212, 0.716, 0.782, 0.534, 1.939, 1.374, -0.083, 2.318, 0.982],
[-2.33, 0.575, -0.543, -0.38, -2.153, 1.717, -1.219, 0.725, 0.273, 1.908, 0.488, 1.426, 0.108, 2.586, 0.653, 0.317, 0.112, 3.138, 0.212, 1.393, -0.506, 1.87, 0.332, 1.893, 1.017],
[0.841, 0.146, 0.716, -0.233, -0.206, 0.237, -0.307, 2.499, -1.619, 1.957, -0.12, 3.058, 0.511, 3.598, 0.286, 0.922, 0.164, 0.782, -3.468, 0.262, 0.812, 0.798, 1.209, 2.964, -1.47],
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],
"smps": ["S1", "S2", "S3", "S4", "S5", "S6", "S7", "S8", "S9", "S10", "S11", "S12", "S13", "S14", "S15", "S16", "S17", "S18", "S19", "S20", "S21", "S22", "S23", "S24", "S25"],
"vars": ["V1", "V2", "V3", "V4", "V5", "V6", "V7", "V8", "V9", "V10", "V11", "V12", "V13", "V14", "V15", "V16", "V17", "V18", "V19", "V20", "V21", "V22", "V23", "V24", "V25", "V26", "V27", "V28", "V29", "V30", "V31", "V32", "V33", "V34", "V35", "V36", "V37", "V38", "V39", "V40"]
},
"z": {
"Lab": ["A", "A", "A", "A", "A", "A", "A", "A", "A", "A", "A", "A", "A", "A", "A", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B", "B"],
"Sens": [1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4],
"Type": ["Pro", "Tyr", "Pho", "Kin", "Oth", "Pro", "Tyr", "Pho", "Kin", "Oth", "Pro", "Tyr", "Pho", "Kin", "Oth", "Pro", "Tyr", "Pho", "Kin", "Oth", "Pro", "Tyr", "Pho", "Kin", "Oth", "Pro", "Tyr", "Pho", "Kin", "Oth", "Pro", "Tyr", "Pho", "Kin", "Oth", "Pro", "Tyr", "Pho", "Kin", "Oth"]
}
},
config = {
"colorSpectrum": ["blue", "white", "red"],
"colorSpectrumBreaks": [1, 2, 10],
"graphType": "Heatmap",
"heatmapCellBoxColor": "rgb(255,255,255)",
"samplesClustered": True,
"showSmpDendrogram": False,
"showVarDendrogram": False,
"title": "Custom color breaks",
"variablesClustered": True,
"xAxis": ["V1", "V2", "V3", "V4", "V5", "V6", "V7", "V8", "V9", "V10", "V11", "V12", "V13", "V14", "V15", "V16", "V17", "V18", "V19", "V20", "V21", "V22", "V23", "V24", "V25", "V26", "V27", "V28", "V29", "V30", "V31", "V32", "V33", "V34", "V35", "V36", "V37", "V38", "V39", "V40"]
},
width = 600,
height = 600
)
)
