Fish Chart

Fish plots are designed to visualize tumor evolution. This visualizationwas inspired by the fishplot package for R by Christopher A. Miller, Joshua McMichael, Ha X. Dang, Christopher A. Maher, Li Ding, Timothy J. Ley, Elaine R. Mardis & Richard K. Wilson


Example Color Themes

Example Fonts



Show Code

Tools

<!-- Include the CanvasXpress library in your HTML file -->
<link rel="stylesheet" href="https://www.canvasxpress.org/dist/canvasXpress.css" type="text/css"/>
<script src="https://www.canvasxpress.org/canvasXpress.min.js"></script>


<!-- Create a canvas element for the chart with the desired dimensions -->
<div>
  <canvas id="canvasId" width="600" height="600"</canvas>
</div>


<!-- Create a script to initialize the chart -->
<script>

  <!-- Create the data for the graph -->
  var data = {
     "y" : {
        "data" : [
          [100,2,2,98],
          [45,0,0,0],
          [0,0,2,95],
          [0,0,1,40]
        ],
        "smps" : [0,30,75,150],
        "vars" : ["Founding","Subclone 1","Subclone 2","Subclone 3"]
     }
  }
  
  
  <-- Create the configuration for the graph -->
  var config = {
     "backgroundType":"window",
     "backgroundWindow":"#ffe4c4",
     "colors":[
        "rgb(136,136,136)",
        "rgb(239,0,0)",
        "rgb(255,96,0)",
        "rgb(255,207,0)",
        "rgb(191,255,64)",
        "rgb(80,255,175)",
        "rgb(0,223,255)",
        "rgb(0,112,255)",
        "rgb(0,0,255)",
        "rgb(0,0,143)"
     ],
     "fishAxis":[
        "0",
        "150"
     ],
     "fishParents":[
        "0",
        "1",
        "1",
        "3"
     ],
     "fishShape":"spline",
     "fishTimepoints":[
        "0",
        "30",
        "75",
        "150"
     ],
     "graphType":"Fish",
     "legendColumns":"4",
     "legendKeyBackgroundBorderColor":"rgba(255,255,255,0)",
     "legendKeyBackgroundColor":"rgba(255,255,255,0)",
     "legendPosition":"bottom",
     "title":"Sample1"
  }
  

  <!-- Call the CanvasXpress function to create the graph -->
  var cX = new CanvasXpress("canvasId", data, config);


</script>
library(canvasXpress)
y=read.table("https://www.canvasxpress.org/data/cX-fish-dat.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE)
canvasXpress(
  data=y,
  backgroundType="window",
  backgroundWindow="#ffe4c4",
  colors=list("rgb(136,136,136)", "rgb(239,0,0)", "rgb(255,96,0)", "rgb(255,207,0)", "rgb(191,255,64)", "rgb(80,255,175)", "rgb(0,223,255)", "rgb(0,112,255)", "rgb(0,0,255)", "rgb(0,0,143)"),
  fishAxis=list(0, 150),
  fishParents=list(0, 1, 1, 3),
  fishShape="spline",
  fishTimepoints=list(0, 30, 75, 150),
  graphType="Fish",
  legendColumns=4,
  legendKeyBackgroundBorderColor="rgba(255,255,255,0)",
  legendKeyBackgroundColor="rgba(255,255,255,0)",
  legendPosition="bottom",
  title="Sample1"
)