Fish Chart

Fish plots are designed to visualize tumor evolution. This visualizationwas inspired by the fishplot package for R by Christopher A. Miller, Joshua McMichael, Ha X. Dang, Christopher A. Maher, Li Ding, Timothy J. Ley, Elaine R. Mardis & Richard K. Wilson


Example Color Themes

Example Fonts

Aa Aa Aa Aa Aa Aa Aa Aa Aa Aa


Show Code

Tools

<head>
  <!-- Include the CanvasXpress library in your HTML file -->
  <link rel="stylesheet" href="https://www.canvasxpress.org/dist/canvasXpress.css" type="text/css"/>
  <script src="https://www.canvasxpress.org/dist/canvasXpress.min.js"></script>
</head>

<body>

  <!-- Create a canvas element for the chart with the desired dimensions -->
  <div>
    <canvas id="canvasId" width="600" height="600"></canvas>
  </div>


  <!-- Create a script to initialize the chart -->
  <script>

    // Create the data for the graph
    var data = {
       "y" : {
          "data" : [
            [100,100],
            [98,44],
            [46,1],
            [1,55]
          ],
          "smps" : ["Primary","Post-AI"],
          "vars" : ["S1","S2","S3","S4"]
       }
    }
    
    
    // Create the configuration for the graph
    var config = {
       "backgroundType":"panelSolidGradient",
       "colorSpectrum":[
          "#ffe4c4",
          "#ffb90f",
          "#cd6600"
       ],
       "colors":[
          "#1B9E77",
          "#D95F02",
          "#7570B3",
          "#E7298A"
       ],
       "fishAxis":[
          "0",
          "120"
       ],
       "fishAxisLabels":[
          "Primary",
          "Post-AI"
       ],
       "fishParents":[
          "0",
          "1",
          "2",
          "1"
       ],
       "fishShape":"polygon",
       "fishTimepoints":[
          "0",
          "120"
       ],
       "gradientOrientation":"horizontal",
       "graphType":"Fish",
       "legendKeyBackgroundBorderColor":"rgba(255,255,255,0)",
       "legendKeyBackgroundColor":"rgba(255,255,255,0)",
       "title":"BRC32"
    }
    

    // Call the CanvasXpress function to create the graph
    var cX = new CanvasXpress("canvasId", data, config);


  </script>

</body>

library(canvasXpress)
y=read.table("https://www.canvasxpress.org/data/cX-fish3-dat.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE)
canvasXpress(
  data=y,
  backgroundType="panelSolidGradient",
  colorSpectrum=list("#ffe4c4", "#ffb90f", "#cd6600"),
  colors=list("#1B9E77", "#D95F02", "#7570B3", "#E7298A"),
  fishAxis=list(0, 120),
  fishAxisLabels=list("Primary", "Post-AI"),
  fishParents=list(0, 1, 2, 1),
  fishShape="polygon",
  fishTimepoints=list(0, 120),
  gradientOrientation="horizontal",
  graphType="Fish",
  legendKeyBackgroundBorderColor="rgba(255,255,255,0)",
  legendKeyBackgroundColor="rgba(255,255,255,0)",
  title="BRC32"
)
⇧