Fish Chart

Fish plots are designed to visualize tumor evolution. This visualizationwas inspired by the fishplot package for R by Christopher A. Miller, Joshua McMichael, Ha X. Dang, Christopher A. Maher, Li Ding, Timothy J. Ley, Elaine R. Mardis & Richard K. Wilson


Example Color Themes

Example Fonts



Show Code

Tools

<!-- Include the CanvasXpress library in your HTML file -->
<link rel="stylesheet" href="https://www.canvasxpress.org/dist/canvasXpress.css" type="text/css"/>
<script src="https://www.canvasxpress.org/canvasXpress.min.js"></script>


<!-- Create a canvas element for the chart with the desired dimensions -->
<div>
  <canvas id="canvasId" width="600" height="600"</canvas>
</div>


<!-- Create a script to initialize the chart -->
<script>

  <!-- Create the data for the graph -->
  var data = {
     "y" : {
        "data" : [
          [99,1,3,1,3,80,0.1],
          [30,0,0,0,0,0,0],
          [2,0.1,2.5,0.9,0.9,76,0.005],
          [60,0,0,0,0,0,0],
          [0,0,0,0,0.1,60,0.001],
          [2,0,0,0,0,0,0],
          [1,1,1,10,20,15,0]
        ],
        "smps" : [0,34,69,187,334,505,530],
        "vars" : ["C1","C2","C3","C4","C5","C6","C7"]
     }
  }
  
  
  <-- Create the configuration for the graph -->
  var config = {
     "backgroundType":"windowSolidGradient",
     "colorSpectrum":[
        "#ffe4c4",
        "#ffb90f",
        "#cd6600"
     ],
     "colors":[
        "#888888",
        "#EF0000",
        "#8FFF40",
        "#FF6000",
        "#50FFAF",
        "#FFCF00",
        "#0070FF"
     ],
     "fishAxis":[
        "0",
        "34",
        "69",
        "187",
        "334",
        "505",
        "530",
        "650",
        "750"
     ],
     "fishParents":[
        "0",
        "1",
        "1",
        "1",
        "3",
        "4",
        "0"
     ],
     "fishSeparateIndependentClones":"true",
     "fishShape":"spline",
     "fishTimepoints":[
        "0",
        "34",
        "69",
        "187",
        "334",
        "505",
        "530"
     ],
     "gradientOrientation":"horizontal",
     "graphType":"Fish",
     "legendKeyBackgroundBorderColor":"rgba(255,255,255,0)",
     "legendKeyBackgroundColor":"rgba(255,255,255,0)"
  }
  

  <!-- Call the CanvasXpress function to create the graph -->
  var cX = new CanvasXpress("canvasId", data, config);


</script>
library(canvasXpress)
y=read.table("https://www.canvasxpress.org/data/cX-fish4-dat.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE)
canvasXpress(
  data=y,
  backgroundType="windowSolidGradient",
  colorSpectrum=list("#ffe4c4", "#ffb90f", "#cd6600"),
  colors=list("#888888", "#EF0000", "#8FFF40", "#FF6000", "#50FFAF", "#FFCF00", "#0070FF"),
  fishAxis=list(0, 34, 69, 187, 334, 505, 530, 650, 750),
  fishParents=list(0, 1, 1, 1, 3, 4, 0),
  fishSeparateIndependentClones=TRUE,
  fishShape="spline",
  fishTimepoints=list(0, 34, 69, 187, 334, 505, 530),
  gradientOrientation="horizontal",
  graphType="Fish",
  legendKeyBackgroundBorderColor="rgba(255,255,255,0)",
  legendKeyBackgroundColor="rgba(255,255,255,0)"
)