Circle Network Visualization Tool
Circular plot or Circus plot is a type of data visualization often used in bioinformatics to display relationships between different genomic elements or datasets. It typically consists of a circular layout, with arcs, ribbons, or links connecting points on the circle to represent relationships or interactions. It is commonly used to show connections between genes, chromosomes, or other biological data in a compact and visually informative way
<html>
<head>
<!-- Include the CanvasXpress library in your HTML file -->
<link rel="stylesheet" href="https://www.canvasxpress.org/dist/canvasXpress.css" type="text/css"/>
<script src="https://www.canvasxpress.org/dist/canvasXpress.min.js"></script>
</head>
<body>
<!-- Create a canvas element for the chart with the desired dimensions -->
<div>
<canvas id="canvasId" width="600" height="600"></canvas>
</div>
<!-- Create a script to initialize the chart -->
<script>
// Use a data frame (2D-array) for the graph
var data = [
[ "Id", "var1", "subject", "sample"],
[ "EA832479", 1, "CA013004-1-26", "EA832479"],
[ "EA832490", 1, "CA013004-1-26", "EA832490"],
[ "EA836497", 1, "CA013004-1-26", "EA836497"],
[ "EA836498", 1, "CA013004-1-26", "EA836498"],
[ "EA832494", 1, "CA013004-2-18", "EA832494"],
[ "EA832495", 1, "CA013004-2-18", "EA832495"],
[ "EA836499", 1, "CA013004-2-18", "EA836499"],
[ "EA836500", 1, "CA013004-2-18", "EA836500"],
[ "EA832476", 1, "CA013004-2-39", "EA832476"],
[ "EA832480", 1, "CA013004-2-39", "EA832480"],
[ "EA836501", 1, "CA013004-2-39", "EA836501"],
[ "EA836502", 1, "CA013004-2-39", "EA836502"],
[ "EA832482", 1, "CA013004-2-42", "EA832482"],
[ "EA832500", 1, "CA013004-2-42", "EA832500"],
[ "EA836503", 1, "CA013004-2-42", "EA836503"],
[ "EA836504", 1, "CA013004-2-42", "EA836504"],
[ "EA832481", 1, "CA013004-2-49", "EA832481"],
[ "EA832493", 1, "CA013004-2-49", "EA832493"],
[ "EA836505", 1, "CA013004-2-49", "EA836505"],
[ "EA1011925A18", 1, "CA013004-2-50", "EA1011925A18"],
[ "EA832483", 1, "CA013004-2-50", "EA832483"],
[ "EA832491", 1, "CA013004-2-50", "EA832491"],
[ "EA836507", 1, "CA013004-2-50", "EA836507"],
[ "EA836508", 1, "CA013004-2-50", "EA836508"],
[ "EA1011925A25", 1, "CA013004-2-6", "EA1011925A25"],
[ "EA832498", 1, "CA013004-2-6", "EA832498"],
[ "EA832499", 1, "CA013004-2-6", "EA832499"],
[ "EA836509", 1, "CA013004-2-6", "EA836509"],
// ... (data truncated after 29 records for clarity)
]
// Create the configuration for the graph
var config = {
"circularArcSectorSeparation" : 1,
"circularLabelsAlign" : "inside",
"colorScheme" : "Favorite",
"circularConnections" : [
["EA832040","EA1011925A27"],
["EA832040","EA832496"],
["EA832040","EA832497"],
["EA832039","EA1011925A19"],
["EA832039","EA832486"],
["EA832039","EA832492"],
["EA832044","EA1011925A3"],
["EA832045","EA1011925A5"],
["EA832048","EA1011925A10"],
["EA832048","EA832502"],
["EA832048","EA832503"],
["EA832051","EA1011925A9"],
["EA832051","EA832507"],
["EA832051","EA832509"],
["EA832050","EA1011925A12"],
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["EA1011925A19","EA832039"],
["EA1011925A19","EA832486"],
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["EA832476","EA832480"],
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["EA832491","EA832483"],
["EA832492","EA1011925A19"],
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["EA832493","EA836505"],
["EA832493","EA832481"],
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],
"graphType" : "Circular",
"overlayLevelOrientation" : "perpendicular",
"overlayScaleFontFactor" : 1,
"circularTrackOrder" : ["subject","labels","sample"],
"segregateSamplesBy" : ["subject"],
"showLegend" : false,
"smpTextScaleFontFactor" : 0.3,
"xAxis" : ["var1"],
"xAxisShow" : false
}
// Event used to create graph (optional)
var events = false
// Call the CanvasXpress function to create the graph
var cX = new CanvasXpress("canvasId", data, config, events);
</script>
</body>
</html>
<html>
<head>
<!-- Include the CanvasXpress library in your HTML file -->
<link rel="stylesheet" href="https://www.canvasxpress.org/dist/canvasXpress.css" type="text/css"/>
<script src="https://www.canvasxpress.org/dist/canvasXpress.min.js"></script>
</head>
<body>
<!-- Create a canvas element for the chart with the desired dimensions -->
<div>
<canvas id="canvasId" width="600" height="600"></canvas>
</div>
<!-- Create a script to initialize the chart -->
<script>
// Create the data for the graph
var data = {
"x" : {
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},
"y" : {
"data" : [
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"vars" : ["var1"]
}
}
// Create the configuration for the graph
var config = {
"circularArcSectorSeparation" : 1,
"circularLabelsAlign" : "inside",
"colorScheme" : "Favorite",
"circularConnections" : [
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["EA832497","EA832040"],
["EA832497","EA832496"],
["EA832498","EA1011925A25"],
["EA832498","EA832500"],
["EA832499","EA832482"],
["EA832500","EA832498"],
["EA832501","EA1011925A23"],
["EA832501","EA832484"],
["EA832502","EA1011925A10"],
["EA832502","EA832048"],
["EA832502","EA832503"],
["EA832503","EA1011925A10"],
["EA832503","EA832048"],
["EA832503","EA832502"],
["EA832504","EA836531"],
["EA832504","EA1011925A8"],
["EA832504","EA832524"],
["EA832506","EA1011925A13"],
["EA832506","EA832527"],
["EA832507","EA1011925A9"],
["EA832507","EA832051"],
["EA832507","EA832509"],
["EA832508","EA1011925A7"],
["EA832508","EA832513"],
["EA832509","EA1011925A9"],
["EA832509","EA832051"],
["EA832509","EA832507"],
["EA832510","EA1011925A2"],
["EA832510","EA832511"],
["EA832511","EA1011925A2"],
["EA832511","EA832510"],
["EA832513","EA1011925A7"],
["EA832513","EA832508"],
["EA832514","EA1011925A4"],
["EA832514","EA832515"],
["EA832515","EA1011925A4"],
["EA832515","EA832514"],
["EA832517","EA1011925A15"],
["EA832517","EA832518"],
["EA832518","EA1011925A15"],
["EA832518","EA832517"],
["EA832519","EA1011925A6"],
["EA832520","EA1011925A14"],
["EA832521","EA1011925A1"],
["EA832521","EA832525"],
["EA832523","EA1011925A11"],
["EA832524","EA836531"],
["EA832524","EA1011925A8"],
["EA832524","EA832504"],
["EA832525","EA1011925A1"],
["EA832525","EA832521"],
["EA832526","EA836533"],
["EA832526","EA1011925A16"],
["EA832526","EA832475"],
["EA832527","EA1011925A13"],
["EA832527","EA832506"],
["EA836488","EA836513"],
["EA836488","EA836514"],
["EA836494","EA836528"],
["EA836494","EA836529"],
["EA836492","EA836493"],
["EA836496","EA836535"],
["EA836496","EA836536"],
["EA836493","EA836492"],
["EA836533","EA836534"],
["EA836533","EA1011925A16"],
["EA836533","EA832475"],
["EA836533","EA832526"],
["EA836501","EA836502"],
["EA836497","EA836498"],
["EA836502","EA836501"],
["EA836505","EA832481"],
["EA836505","EA832493"],
["EA836503","EA836510"],
["EA836507","EA836508"],
["EA836517","EA836518"],
["EA836511","EA836512"],
["EA836515","EA836516"],
["EA836516","EA836515"],
["EA836498","EA836497"],
["EA836508","EA836507"],
["EA836512","EA836511"],
["EA836499","EA836500"],
["EA836500","EA836499"],
["EA836513","EA836488"],
["EA836513","EA836514"],
["EA836514","EA836488"],
["EA836514","EA836513"],
["EA836509","EA836504"],
["EA836510","EA836503"],
["EA836504","EA836509"],
["EA836518","EA836517"],
["EA836528","EA836494"],
["EA836528","EA836529"],
["EA836529","EA836494"],
["EA836529","EA836528"],
["EA836530","EA836531"],
["EA836526","EA836527"],
["EA836535","EA836496"],
["EA836535","EA836536"],
["EA836523","EA836524"],
["EA836536","EA836496"],
["EA836536","EA836535"],
["EA836539","EA836540"],
["EA836540","EA836539"],
["EA836524","EA836523"],
["EA836521","EA836522"],
["EA836522","EA836521"],
["EA836537","EA836538"],
["EA836538","EA836537"],
["EA836531","EA836530"],
["EA836531","EA1011925A8"],
["EA836531","EA832504"],
["EA836531","EA832524"],
["EA836534","EA836533"],
["EA836527","EA836526"]
],
"graphType" : "Circular",
"overlayLevelOrientation" : "perpendicular",
"overlayScaleFontFactor" : 1,
"circularTrackOrder" : ["subject","labels","sample"],
"segregateSamplesBy" : ["subject"],
"showLegend" : false,
"smpTextScaleFontFactor" : 0.3,
"xAxis" : ["var1"],
"xAxisShow" : false
}
// Event used to create graph (optional)
var events = false
// Call the CanvasXpress function to create the graph
var cX = new CanvasXpress("canvasId", data, config, events);
</script>
</body>
</html>
library(canvasXpress)
y=read.table("https://www.canvasxpress.org/data/r/cX-circularNoData-dat.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE)
x=read.table("https://www.canvasxpress.org/data/r/cX-circularNoData-smp.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE)
canvasXpress(
data=y,
smpAnnot=x,
circularArcSectorSeparation=1,
circularConnections=list(list("EA832040", "EA1011925A27"), list("EA832040", "EA832496"), list("EA832040", "EA832497"), list("EA832039", "EA1011925A19"), list("EA832039", "EA832486"), list("EA832039", "EA832492"), list("EA832044", "EA1011925A3"), list("EA832045", "EA1011925A5"), list("EA832048", "EA1011925A10"), list("EA832048", "EA832502"), list("EA832048", "EA832503"), list("EA832051", "EA1011925A9"), list("EA832051", "EA832507"), list("EA832051", "EA832509"), list("EA832050", "EA1011925A12"), list("EA1011925A18", "EA832483"), list("EA1011925A18", "EA832491"), list("EA1011925A19", "EA832039"), list("EA1011925A19", "EA832486"), list("EA1011925A19", "EA832492"), list("EA1011925A23", "EA832484"), list("EA1011925A23", "EA832501"), list("EA1011925A24", "EA832489"), list("EA1011925A25", "EA832498"), list("EA1011925A27", "EA832040"), list("EA1011925A27", "EA832496"), list("EA1011925A27", "EA832497"), list("EA1011925A30", "EA832487"), list("EA1011925A30", "EA832488"), list("EA1011925A1", "EA832521"), list("EA1011925A1", "EA832525"), list("EA1011925A2", "EA832510"), list("EA1011925A2", "EA832511"), list("EA1011925A3", "EA832044"), list("EA1011925A4", "EA832514"), list("EA1011925A4", "EA832515"), list("EA1011925A5", "EA832045"), list("EA1011925A6", "EA832519"), list("EA1011925A7", "EA832508"), list("EA1011925A7", "EA832513"), list("EA1011925A8", "EA836531"), list("EA1011925A8", "EA832504"), list("EA1011925A8", "EA832524"), list("EA1011925A9", "EA832051"), list("EA1011925A9", "EA832507"), list("EA1011925A9", "EA832509"), list("EA1011925A10", "EA832048"), list("EA1011925A10", "EA832502"), list("EA1011925A10", "EA832503"), list("EA1011925A11", "EA832523"), list("EA1011925A12", "EA832050"), list("EA1011925A13", "EA832506"), list("EA1011925A13", "EA832527"), list("EA1011925A14", "EA832520"), list("EA1011925A15", "EA832517"), list("EA1011925A15", "EA832518"), list("EA1011925A16", "EA836533"), list("EA1011925A16", "EA832475"), list("EA1011925A16", "EA832526"), list("EA832475", "EA836533"), list("EA832475", "EA1011925A16"), list("EA832475", "EA832526"), list("EA832476", "EA832480"), list("EA832479", "EA832490"), list("EA832480", "EA832476"), list("EA832481", "EA836505"), list("EA832481", "EA832493"), list("EA832482", "EA832499"), list("EA832483", "EA1011925A18"), list("EA832483", "EA832491"), list("EA832484", "EA1011925A23"), list("EA832484", "EA832501"), list("EA832486", "EA1011925A19"), list("EA832486", "EA832039"), list("EA832486", "EA832492"), list("EA832487", "EA1011925A30"), list("EA832487", "EA832488"), list("EA832488", "EA1011925A30"), list("EA832488", "EA832487"), list("EA832489", "EA1011925A24"), list("EA832490", "EA832479"), list("EA832491", "EA1011925A18"), list("EA832491", "EA832483"), list("EA832492", "EA1011925A19"), list("EA832492", "EA832039"), list("EA832492", "EA832486"), list("EA832493", "EA836505"), list("EA832493", "EA832481"), list("EA832494", "EA832495"), list("EA832495", "EA832494"), list("EA832496", "EA1011925A27"), list("EA832496", "EA832040"), list("EA832496", "EA832497"), list("EA832497", "EA1011925A27"), list("EA832497", "EA832040"), list("EA832497", "EA832496"), list("EA832498", "EA1011925A25"), list("EA832498", "EA832500"), list("EA832499", "EA832482"), list("EA832500", "EA832498"), list("EA832501", "EA1011925A23"), list("EA832501", "EA832484"), list("EA832502", "EA1011925A10"), list("EA832502", "EA832048"), list("EA832502", "EA832503"), list("EA832503", "EA1011925A10"), list("EA832503", "EA832048"), list("EA832503", "EA832502"), list("EA832504", "EA836531"), list("EA832504", "EA1011925A8"), list("EA832504", "EA832524"), list("EA832506", "EA1011925A13"), list("EA832506", "EA832527"), list("EA832507", "EA1011925A9"), list("EA832507", "EA832051"), list("EA832507", "EA832509"), list("EA832508", "EA1011925A7"), list("EA832508", "EA832513"), list("EA832509", "EA1011925A9"), list("EA832509", "EA832051"), list("EA832509", "EA832507"), list("EA832510", "EA1011925A2"), list("EA832510", "EA832511"), list("EA832511", "EA1011925A2"), list("EA832511", "EA832510"), list("EA832513", "EA1011925A7"), list("EA832513", "EA832508"), list("EA832514", "EA1011925A4"), list("EA832514", "EA832515"), list("EA832515", "EA1011925A4"), list("EA832515", "EA832514"), list("EA832517", "EA1011925A15"), list("EA832517", "EA832518"), list("EA832518", "EA1011925A15"), list("EA832518", "EA832517"), list("EA832519", "EA1011925A6"), list("EA832520", "EA1011925A14"), list("EA832521", "EA1011925A1"), list("EA832521", "EA832525"), list("EA832523", "EA1011925A11"), list("EA832524", "EA836531"), list("EA832524", "EA1011925A8"), list("EA832524", "EA832504"), list("EA832525", "EA1011925A1"), list("EA832525", "EA832521"), list("EA832526", "EA836533"), list("EA832526", "EA1011925A16"), list("EA832526", "EA832475"), list("EA832527", "EA1011925A13"), list("EA832527", "EA832506"), list("EA836488", "EA836513"), list("EA836488", "EA836514"), list("EA836494", "EA836528"), list("EA836494", "EA836529"), list("EA836492", "EA836493"), list("EA836496", "EA836535"), list("EA836496", "EA836536"), list("EA836493", "EA836492"), list("EA836533", "EA836534"), list("EA836533", "EA1011925A16"), list("EA836533", "EA832475"), list("EA836533", "EA832526"), list("EA836501", "EA836502"), list("EA836497", "EA836498"), list("EA836502", "EA836501"), list("EA836505", "EA832481"), list("EA836505", "EA832493"), list("EA836503", "EA836510"), list("EA836507", "EA836508"), list("EA836517", "EA836518"), list("EA836511", "EA836512"), list("EA836515", "EA836516"), list("EA836516", "EA836515"), list("EA836498", "EA836497"), list("EA836508", "EA836507"), list("EA836512", "EA836511"), list("EA836499", "EA836500"), list("EA836500", "EA836499"), list("EA836513", "EA836488"), list("EA836513", "EA836514"), list("EA836514", "EA836488"), list("EA836514", "EA836513"), list("EA836509", "EA836504"), list("EA836510", "EA836503"), list("EA836504", "EA836509"), list("EA836518", "EA836517"), list("EA836528", "EA836494"), list("EA836528", "EA836529"), list("EA836529", "EA836494"), list("EA836529", "EA836528"), list("EA836530", "EA836531"), list("EA836526", "EA836527"), list("EA836535", "EA836496"), list("EA836535", "EA836536"), list("EA836523", "EA836524"), list("EA836536", "EA836496"), list("EA836536", "EA836535"), list("EA836539", "EA836540"), list("EA836540", "EA836539"), list("EA836524", "EA836523"), list("EA836521", "EA836522"), list("EA836522", "EA836521"), list("EA836537", "EA836538"), list("EA836538", "EA836537"), list("EA836531", "EA836530"), list("EA836531", "EA1011925A8"), list("EA836531", "EA832504"), list("EA836531", "EA832524"), list("EA836534", "EA836533"), list("EA836527", "EA836526")),
circularLabelsAlign="inside",
circularTrackOrder=list("subject", "labels", "sample"),
colorScheme="Favorite",
graphType="Circular",
overlayLevelOrientation="perpendicular",
overlayScaleFontFactor=1,
segregateSamplesBy=list("subject"),
showLegend=FALSE,
smpTextScaleFontFactor=0.3,
xAxis=list("var1"),
xAxisShow=FALSE
)
