Clustered Heatmap with Multiple Annotation Tracks
Heatmap graphs provide a visual representation of data using color variations to represent different values. They are incredibly useful for identifying patterns, trends, and outliers in datasets. Commonly used in various fields, from geographical analysis to website usability studies, heatmaps offer an intuitive way to understand complex data. Creating effective heatmaps involves selecting the appropriate color scheme and scaling to highlight meaningful differences. Interactive heatmaps further enhance analysis by allowing users to zoom, pan, and explore data points in detail. This makes them powerful tools for data-driven decision making across numerous disciplines.
<html>
<head>
<!-- Include the CanvasXpress library in your HTML file -->
<link rel="stylesheet" href="https://www.canvasxpress.org/dist/canvasXpress.css" type="text/css"/>
<script src="https://www.canvasxpress.org/dist/canvasXpress.min.js"></script>
</head>
<body>
<!-- Create a canvas element for the chart with the desired dimensions -->
<div>
<canvas id="canvasId" width="600" height="600"></canvas>
</div>
<!-- Create a script to initialize the chart -->
<script>
// Create the data for the graph
var data = {
"y": {
"vars": [
"V1",
"V2",
"V3",
"V4",
"V5",
"V6",
"V7",
"V8"
],
"smps": [
"S1",
"S2",
"S3",
"S4",
"S5",
"S6"
],
"data": [
[
0.372,
0.932,
1.148,
-0.98,
-1.265,
-0.823
],
[
0.967,
1.184,
0.374,
-1.253,
-0.553,
-0.634
],
[
1.337,
1.144,
0.764,
-0.896,
0.1,
-0.901
],
[
0.525,
0.402,
0.833,
-0.749,
-0.921,
-0.822
],
[
-0.704,
-0.558,
-0.416,
0.873,
0.174,
1.046
],
[
-1.297,
-0.86,
-1.316,
0.801,
0.528,
0.875
],
[
0.355,
-0.817,
-0.505,
0.337,
0.699,
1.032
],
[
-0.832,
-0.67,
-0.764,
0.448,
0.997,
0.516
]
]
},
"x": {
"rows": [
"A",
"A",
"A",
"B",
"B",
"B"
],
"rp_a": [
4.26,
6.33,
5.29,
3.14,
2.6,
3.06
],
"rp_b": [
1.77,
3.1,
3.22,
3.28,
5.27,
3.15
],
"rp_c": [
1.31,
5.08,
1.89,
2.83,
3.3,
2.98
],
"rv_01": [
-3.1,
-2.27,
0.4,
1.33,
1.85,
3.24
],
"rv_02": [
-1.18,
-1.16,
-1.05,
-0.16,
1.05,
2.14
],
"rv_03": [
-1.45,
-0.58,
-1.48,
1.74,
2.04,
1.77
],
"rv_04": [
-1.73,
-1.26,
-2.37,
1.11,
1.06,
3.21
],
"rv_05": [
-0.59,
-0.91,
-1.06,
2.92,
2.0,
2.73
],
"rv_06": [
-3.16,
-2.22,
-2.81,
2.8,
1.36,
1.88
],
"rv_07": [
-1.56,
-0.51,
-2.87,
0.97,
2.9,
0.78
],
"rv_08": [
-1.5,
-2.63,
-2.12,
-0.0,
2.78,
1.45
],
"rv_09": [
-2.99,
0.28,
-1.22,
5.86,
2.45,
1.62
],
"rv_10": [
-1.88,
-0.23,
-2.03,
2.5,
2.57,
1.0
],
"rv_11": [
-1.86,
-2.55,
-3.37,
2.96,
2.73,
2.08
],
"rv_12": [
-3.0,
-4.21,
-1.47,
1.89,
0.15,
1.93
]
},
"z": {
"c": [
"G1",
"G2",
"G3",
"G4",
"G1",
"G2",
"G3",
"G4"
],
"p1_a": [
6.31,
2.74,
4.53,
3.5,
4.93,
2.6,
5.0,
3.31
],
"p1_b": [
5.39,
4.44,
3.71,
2.33,
4.65,
4.2,
5.96,
2.93
],
"p1_c": [
4.33,
4.26,
3.92,
3.81,
3.77,
2.6,
1.98,
2.91
],
"p1_d": [
4.39,
5.77,
4.97,
5.08,
4.67,
4.55,
3.78,
4.66
],
"p2": [
5.85,
5.02,
2.52,
5.42,
2.05,
2.97,
5.27,
4.21
],
"F1_01": [
0.58,
0.06,
-1.79,
-0.19,
1.01,
2.9,
3.04,
1.82
],
"F1_02": [
-3.23,
-5.86,
-0.41,
0.63,
4.33,
-0.25,
1.59,
2.7
],
"F1_03": [
0.21,
0.36,
-0.75,
-0.76,
-0.6,
1.83,
0.98,
0.97
],
"F1_04": [
-2.13,
-2.53,
-3.98,
-0.35,
3.83,
1.75,
1.78,
0.78
],
"F1_05": [
-3.51,
-1.62,
-3.59,
1.63,
3.1,
1.56,
2.67,
-0.88
],
"F1_06": [
-3.61,
-1.7,
-0.11,
-4.27,
0.48,
1.48,
1.8,
0.34
],
"F1_07": [
-3.03,
-0.61,
1.83,
-1.21,
3.78,
1.86,
1.21,
1.33
],
"F1_08": [
-2.05,
-1.85,
-0.82,
-3.71,
-0.76,
3.44,
1.03,
4.69
],
"F1_09": [
-1.03,
-0.16,
0.28,
-4.91,
1.6,
-2.68,
1.44,
2.58
],
"F1_10": [
-1.37,
-2.03,
-1.46,
-1.28,
1.79,
1.13,
1.21,
1.29
],
"F1_11": [
-2.19,
-0.67,
-3.03,
-2.75,
0.47,
0.12,
3.1,
-1.69
],
"F1_12": [
-2.29,
-1.09,
-3.08,
-3.09,
0.91,
0.05,
0.53,
3.17
],
"F1_13": [
-2.71,
-0.87,
1.21,
-3.62,
3.92,
1.79,
0.68,
0.29
],
"F1_14": [
-3.92,
-3.66,
-4.29,
-0.76,
3.09,
1.94,
4.57,
2.55
],
"F1_15": [
-3.87,
-0.2,
-1.5,
-1.55,
-0.15,
1.5,
2.93,
-0.16
],
"F1_16": [
-2.12,
-3.54,
-0.48,
-3.15,
1.61,
4.35,
2.97,
0.45
]
}
}
// Create the configuration for the graph
var config = {
"graphType": "Heatmap",
"samplesClustered": true,
"variablesClustered": true,
"colorSpectrum": [
"blue",
"white",
"red"
],
"varOverlays": [
"c",
"-",
"p1_a",
"p1_b",
"p1_c",
"p1_d",
"-",
"p2",
"-",
"F1_01",
"F1_02",
"F1_03",
"F1_04",
"F1_05",
"F1_06",
"F1_07",
"F1_08",
"F1_09",
"F1_10",
"F1_11",
"F1_12",
"F1_13",
"F1_14",
"F1_15",
"F1_16"
],
"varOverlayProperties": {
"c": {
"type": "Default",
"position": "top",
"showLegend": true,
"thickness": 20
},
"p1_a": {
"type": "Pie",
"position": "top",
"showLegend": true,
"thickness": 50,
"hideName": true
},
"p1_b": {
"type": "Pie",
"position": "top",
"showLegend": true,
"thickness": 50,
"hideName": true
},
"p1_c": {
"type": "Pie",
"position": "top",
"showLegend": true,
"thickness": 50,
"hideName": true
},
"p1_d": {
"type": "Pie",
"position": "top",
"showLegend": true,
"thickness": 50,
"hideName": true
},
"p2": {
"type": "Bar",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 40,
"hideName": true
},
"F1_01": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
},
"F1_02": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
},
"F1_03": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
},
"F1_04": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
},
"F1_05": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
},
"F1_06": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
},
"F1_07": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
},
"F1_08": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
},
"F1_09": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
},
"F1_10": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
},
"F1_11": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
},
"F1_12": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
},
"F1_13": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
},
"F1_14": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
},
"F1_15": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
},
"F1_16": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": true
}
},
"smpOverlays": [
"rows",
"-",
"rp_a",
"rp_b",
"rp_c",
"-",
"rv_01",
"rv_02",
"rv_03",
"rv_04",
"rv_05",
"rv_06",
"rv_07",
"rv_08",
"rv_09",
"rv_10",
"rv_11",
"rv_12"
],
"smpOverlayProperties": {
"rows": {
"type": "Default",
"position": "left",
"showLegend": true,
"thickness": 20
},
"rp_a": {
"type": "Pie",
"position": "right",
"showLegend": true,
"thickness": 50,
"hideName": true
},
"rp_b": {
"type": "Pie",
"position": "right",
"showLegend": true,
"thickness": 50,
"hideName": true
},
"rp_c": {
"type": "Pie",
"position": "right",
"showLegend": true,
"thickness": 50,
"hideName": true
},
"rv_01": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": true
},
"rv_02": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": true
},
"rv_03": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": true
},
"rv_04": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": true
},
"rv_05": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": true
},
"rv_06": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": true
},
"rv_07": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": true
},
"rv_08": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": true
},
"rv_09": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": true
},
"rv_10": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": true
},
"rv_11": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": true
},
"rv_12": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": true
}
},
"showSmpDendrogram": true,
"showVarDendrogram": true,
"title": "Heatmap with violin, pie, bar and categorical annotation tracks"
}
// Event used to create graph (optional)
var events = false
// Call the CanvasXpress function to create the graph
var cX = new CanvasXpress("canvasId", data, config, events);
</script>
</body>
</html>
library(canvasXpress)
y=read.table("https://www.canvasxpress.org/data/r/cX-heatmap20-dat.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE)
x=read.table("https://www.canvasxpress.org/data/r/cX-heatmap20-smp.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE)
z=read.table("https://www.canvasxpress.org/data/r/cX-heatmap20-var.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE)
canvasXpress(
data=y,
smpAnnot=x,
varAnnot=z,
colorSpectrum=list("blue", "white", "red"),
graphType="Heatmap",
samplesClustered=TRUE,
showSmpDendrogram=TRUE,
showVarDendrogram=TRUE,
smpOverlayProperties=list(rows=list(position="left", showLegend="True", thickness=20, type="Default"), rp_a=list(hideName="True", position="right", showLegend="True", thickness=50, type="Pie"), rp_b=list(hideName="True", position="right", showLegend="True", thickness=50, type="Pie"), rp_c=list(hideName="True", position="right", showLegend="True", thickness=50, type="Pie"), rv_01=list(color="rgb(49,130,189)", hideName="True", position="right", thickness=80, type="Violin"), rv_02=list(color="rgb(49,130,189)", hideName="True", position="right", thickness=80, type="Violin"), rv_03=list(color="rgb(49,130,189)", hideName="True", position="right", thickness=80, type="Violin"), rv_04=list(color="rgb(49,130,189)", hideName="True", position="right", thickness=80, type="Violin"), rv_05=list(color="rgb(49,130,189)", hideName="True", position="right", thickness=80, type="Violin"), rv_06=list(color="rgb(49,130,189)", hideName="True", position="right", thickness=80, type="Violin"), rv_07=list(color="rgb(49,130,189)", hideName="True", position="right", thickness=80, type="Violin"), rv_08=list(color="rgb(49,130,189)", hideName="True", position="right", thickness=80, type="Violin"), rv_09=list(color="rgb(49,130,189)", hideName="True", position="right", thickness=80, type="Violin"), rv_10=list(color="rgb(49,130,189)", hideName="True", position="right", thickness=80, type="Violin"), rv_11=list(color="rgb(49,130,189)", hideName="True", position="right", thickness=80, type="Violin"), rv_12=list(color="rgb(49,130,189)", hideName="True", position="right", thickness=80, type="Violin")),
smpOverlays=list("rows", "-", "rp_a", "rp_b", "rp_c", "-", "rv_01", "rv_02", "rv_03", "rv_04", "rv_05", "rv_06", "rv_07", "rv_08", "rv_09", "rv_10", "rv_11", "rv_12"),
title="Heatmap with violin, pie, bar and categorical annotation tracks",
varOverlayProperties=list(F1_01=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), F1_02=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), F1_03=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), F1_04=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), F1_05=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), F1_06=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), F1_07=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), F1_08=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), F1_09=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), F1_10=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), F1_11=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), F1_12=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), F1_13=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), F1_14=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), F1_15=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), F1_16=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=90, type="Violin"), c=list(position="top", showLegend="True", thickness=20, type="Default"), p1_a=list(hideName="True", position="top", showLegend="True", thickness=50, type="Pie"), p1_b=list(hideName="True", position="top", showLegend="True", thickness=50, type="Pie"), p1_c=list(hideName="True", position="top", showLegend="True", thickness=50, type="Pie"), p1_d=list(hideName="True", position="top", showLegend="True", thickness=50, type="Pie"), p2=list(color="rgb(49,130,189)", hideName="True", position="top", thickness=40, type="Bar")),
varOverlays=list("c", "-", "p1_a", "p1_b", "p1_c", "p1_d", "-", "p2", "-", "F1_01", "F1_02", "F1_03", "F1_04", "F1_05", "F1_06", "F1_07", "F1_08", "F1_09", "F1_10", "F1_11", "F1_12", "F1_13", "F1_14", "F1_15", "F1_16"),
variablesClustered=TRUE
)
from canvasxpress.canvas import CanvasXpress
from canvasxpress.plot import show_in_browser
if __name__ == "__main__":
# Define the chart with its data and configuration
chart: CanvasXpress = CanvasXpress(
render_to = "heatmap20",
data = {
"y": {
"vars": ["V1", "V2", "V3", "V4", "V5", "V6", "V7", "V8"],
"smps": ["S1", "S2", "S3", "S4", "S5", "S6"],
"data": [
[0.372, 0.932, 1.148, -0.98, -1.265, -0.823],
[0.967, 1.184, 0.374, -1.253, -0.553, -0.634],
[1.337, 1.144, 0.764, -0.896, 0.1, -0.901],
[0.525, 0.402, 0.833, -0.749, -0.921, -0.822],
[-0.704, -0.558, -0.416, 0.873, 0.174, 1.046],
[-1.297, -0.86, -1.316, 0.801, 0.528, 0.875],
[0.355, -0.817, -0.505, 0.337, 0.699, 1.032],
[-0.832, -0.67, -0.764, 0.448, 0.997, 0.516]
]
},
"x": {
"rows": ["A", "A", "A", "B", "B", "B"],
"rp_a": [4.26, 6.33, 5.29, 3.14, 2.6, 3.06],
"rp_b": [1.77, 3.1, 3.22, 3.28, 5.27, 3.15],
"rp_c": [1.31, 5.08, 1.89, 2.83, 3.3, 2.98],
"rv_01": [-3.1, -2.27, 0.4, 1.33, 1.85, 3.24],
"rv_02": [-1.18, -1.16, -1.05, -0.16, 1.05, 2.14],
"rv_03": [-1.45, -0.58, -1.48, 1.74, 2.04, 1.77],
"rv_04": [-1.73, -1.26, -2.37, 1.11, 1.06, 3.21],
"rv_05": [-0.59, -0.91, -1.06, 2.92, 2.0, 2.73],
"rv_06": [-3.16, -2.22, -2.81, 2.8, 1.36, 1.88],
"rv_07": [-1.56, -0.51, -2.87, 0.97, 2.9, 0.78],
"rv_08": [-1.5, -2.63, -2.12, -0.0, 2.78, 1.45],
"rv_09": [-2.99, 0.28, -1.22, 5.86, 2.45, 1.62],
"rv_10": [-1.88, -0.23, -2.03, 2.5, 2.57, 1.0],
"rv_11": [-1.86, -2.55, -3.37, 2.96, 2.73, 2.08],
"rv_12": [-3.0, -4.21, -1.47, 1.89, 0.15, 1.93]
},
"z": {
"c": ["G1", "G2", "G3", "G4", "G1", "G2", "G3", "G4"],
"p1_a": [6.31, 2.74, 4.53, 3.5, 4.93, 2.6, 5.0, 3.31],
"p1_b": [5.39, 4.44, 3.71, 2.33, 4.65, 4.2, 5.96, 2.93],
"p1_c": [4.33, 4.26, 3.92, 3.81, 3.77, 2.6, 1.98, 2.91],
"p1_d": [4.39, 5.77, 4.97, 5.08, 4.67, 4.55, 3.78, 4.66],
"p2": [5.85, 5.02, 2.52, 5.42, 2.05, 2.97, 5.27, 4.21],
"F1_01": [0.58, 0.06, -1.79, -0.19, 1.01, 2.9, 3.04, 1.82],
"F1_02": [-3.23, -5.86, -0.41, 0.63, 4.33, -0.25, 1.59, 2.7],
"F1_03": [0.21, 0.36, -0.75, -0.76, -0.6, 1.83, 0.98, 0.97],
"F1_04": [-2.13, -2.53, -3.98, -0.35, 3.83, 1.75, 1.78, 0.78],
"F1_05": [-3.51, -1.62, -3.59, 1.63, 3.1, 1.56, 2.67, -0.88],
"F1_06": [-3.61, -1.7, -0.11, -4.27, 0.48, 1.48, 1.8, 0.34],
"F1_07": [-3.03, -0.61, 1.83, -1.21, 3.78, 1.86, 1.21, 1.33],
"F1_08": [-2.05, -1.85, -0.82, -3.71, -0.76, 3.44, 1.03, 4.69],
"F1_09": [-1.03, -0.16, 0.28, -4.91, 1.6, -2.68, 1.44, 2.58],
"F1_10": [-1.37, -2.03, -1.46, -1.28, 1.79, 1.13, 1.21, 1.29],
"F1_11": [-2.19, -0.67, -3.03, -2.75, 0.47, 0.12, 3.1, -1.69],
"F1_12": [-2.29, -1.09, -3.08, -3.09, 0.91, 0.05, 0.53, 3.17],
"F1_13": [-2.71, -0.87, 1.21, -3.62, 3.92, 1.79, 0.68, 0.29],
"F1_14": [-3.92, -3.66, -4.29, -0.76, 3.09, 1.94, 4.57, 2.55],
"F1_15": [-3.87, -0.2, -1.5, -1.55, -0.15, 1.5, 2.93, -0.16],
"F1_16": [-2.12, -3.54, -0.48, -3.15, 1.61, 4.35, 2.97, 0.45]
}
},
config = {
"graphType": "Heatmap",
"samplesClustered": True,
"variablesClustered": True,
"colorSpectrum": ["blue", "white", "red"],
"varOverlays": ["c", "-", "p1_a", "p1_b", "p1_c", "p1_d", "-", "p2", "-", "F1_01", "F1_02", "F1_03", "F1_04", "F1_05", "F1_06", "F1_07", "F1_08", "F1_09", "F1_10", "F1_11", "F1_12", "F1_13", "F1_14", "F1_15", "F1_16"],
"varOverlayProperties": {
"c": {
"type": "Default",
"position": "top",
"showLegend": True,
"thickness": 20
},
"p1_a": {
"type": "Pie",
"position": "top",
"showLegend": True,
"thickness": 50,
"hideName": True
},
"p1_b": {
"type": "Pie",
"position": "top",
"showLegend": True,
"thickness": 50,
"hideName": True
},
"p1_c": {
"type": "Pie",
"position": "top",
"showLegend": True,
"thickness": 50,
"hideName": True
},
"p1_d": {
"type": "Pie",
"position": "top",
"showLegend": True,
"thickness": 50,
"hideName": True
},
"p2": {
"type": "Bar",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 40,
"hideName": True
},
"F1_01": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_02": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_03": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_04": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_05": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_06": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_07": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_08": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_09": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_10": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_11": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_12": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_13": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_14": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_15": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_16": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
}
},
"smpOverlays": ["rows", "-", "rp_a", "rp_b", "rp_c", "-", "rv_01", "rv_02", "rv_03", "rv_04", "rv_05", "rv_06", "rv_07", "rv_08", "rv_09", "rv_10", "rv_11", "rv_12"],
"smpOverlayProperties": {
"rows": {
"type": "Default",
"position": "left",
"showLegend": True,
"thickness": 20
},
"rp_a": {
"type": "Pie",
"position": "right",
"showLegend": True,
"thickness": 50,
"hideName": True
},
"rp_b": {
"type": "Pie",
"position": "right",
"showLegend": True,
"thickness": 50,
"hideName": True
},
"rp_c": {
"type": "Pie",
"position": "right",
"showLegend": True,
"thickness": 50,
"hideName": True
},
"rv_01": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_02": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_03": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_04": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_05": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_06": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_07": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_08": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_09": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_10": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_11": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_12": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
}
},
"showSmpDendrogram": True,
"showVarDendrogram": True,
"title": "Heatmap with violin, pie, bar and categorical annotation tracks"
},
width = 600,
height = 600
)
# Display the chart in its own Web page
show_in_browser(chart)
from canvasxpress.canvas import CanvasXpress
from canvasxpress.plot import graph
graph(
CanvasXpress(
render_to = "heatmap20",
data = {
"y": {
"vars": ["V1", "V2", "V3", "V4", "V5", "V6", "V7", "V8"],
"smps": ["S1", "S2", "S3", "S4", "S5", "S6"],
"data": [
[0.372, 0.932, 1.148, -0.98, -1.265, -0.823],
[0.967, 1.184, 0.374, -1.253, -0.553, -0.634],
[1.337, 1.144, 0.764, -0.896, 0.1, -0.901],
[0.525, 0.402, 0.833, -0.749, -0.921, -0.822],
[-0.704, -0.558, -0.416, 0.873, 0.174, 1.046],
[-1.297, -0.86, -1.316, 0.801, 0.528, 0.875],
[0.355, -0.817, -0.505, 0.337, 0.699, 1.032],
[-0.832, -0.67, -0.764, 0.448, 0.997, 0.516]
]
},
"x": {
"rows": ["A", "A", "A", "B", "B", "B"],
"rp_a": [4.26, 6.33, 5.29, 3.14, 2.6, 3.06],
"rp_b": [1.77, 3.1, 3.22, 3.28, 5.27, 3.15],
"rp_c": [1.31, 5.08, 1.89, 2.83, 3.3, 2.98],
"rv_01": [-3.1, -2.27, 0.4, 1.33, 1.85, 3.24],
"rv_02": [-1.18, -1.16, -1.05, -0.16, 1.05, 2.14],
"rv_03": [-1.45, -0.58, -1.48, 1.74, 2.04, 1.77],
"rv_04": [-1.73, -1.26, -2.37, 1.11, 1.06, 3.21],
"rv_05": [-0.59, -0.91, -1.06, 2.92, 2.0, 2.73],
"rv_06": [-3.16, -2.22, -2.81, 2.8, 1.36, 1.88],
"rv_07": [-1.56, -0.51, -2.87, 0.97, 2.9, 0.78],
"rv_08": [-1.5, -2.63, -2.12, -0.0, 2.78, 1.45],
"rv_09": [-2.99, 0.28, -1.22, 5.86, 2.45, 1.62],
"rv_10": [-1.88, -0.23, -2.03, 2.5, 2.57, 1.0],
"rv_11": [-1.86, -2.55, -3.37, 2.96, 2.73, 2.08],
"rv_12": [-3.0, -4.21, -1.47, 1.89, 0.15, 1.93]
},
"z": {
"c": ["G1", "G2", "G3", "G4", "G1", "G2", "G3", "G4"],
"p1_a": [6.31, 2.74, 4.53, 3.5, 4.93, 2.6, 5.0, 3.31],
"p1_b": [5.39, 4.44, 3.71, 2.33, 4.65, 4.2, 5.96, 2.93],
"p1_c": [4.33, 4.26, 3.92, 3.81, 3.77, 2.6, 1.98, 2.91],
"p1_d": [4.39, 5.77, 4.97, 5.08, 4.67, 4.55, 3.78, 4.66],
"p2": [5.85, 5.02, 2.52, 5.42, 2.05, 2.97, 5.27, 4.21],
"F1_01": [0.58, 0.06, -1.79, -0.19, 1.01, 2.9, 3.04, 1.82],
"F1_02": [-3.23, -5.86, -0.41, 0.63, 4.33, -0.25, 1.59, 2.7],
"F1_03": [0.21, 0.36, -0.75, -0.76, -0.6, 1.83, 0.98, 0.97],
"F1_04": [-2.13, -2.53, -3.98, -0.35, 3.83, 1.75, 1.78, 0.78],
"F1_05": [-3.51, -1.62, -3.59, 1.63, 3.1, 1.56, 2.67, -0.88],
"F1_06": [-3.61, -1.7, -0.11, -4.27, 0.48, 1.48, 1.8, 0.34],
"F1_07": [-3.03, -0.61, 1.83, -1.21, 3.78, 1.86, 1.21, 1.33],
"F1_08": [-2.05, -1.85, -0.82, -3.71, -0.76, 3.44, 1.03, 4.69],
"F1_09": [-1.03, -0.16, 0.28, -4.91, 1.6, -2.68, 1.44, 2.58],
"F1_10": [-1.37, -2.03, -1.46, -1.28, 1.79, 1.13, 1.21, 1.29],
"F1_11": [-2.19, -0.67, -3.03, -2.75, 0.47, 0.12, 3.1, -1.69],
"F1_12": [-2.29, -1.09, -3.08, -3.09, 0.91, 0.05, 0.53, 3.17],
"F1_13": [-2.71, -0.87, 1.21, -3.62, 3.92, 1.79, 0.68, 0.29],
"F1_14": [-3.92, -3.66, -4.29, -0.76, 3.09, 1.94, 4.57, 2.55],
"F1_15": [-3.87, -0.2, -1.5, -1.55, -0.15, 1.5, 2.93, -0.16],
"F1_16": [-2.12, -3.54, -0.48, -3.15, 1.61, 4.35, 2.97, 0.45]
}
},
config = {
"graphType": "Heatmap",
"samplesClustered": True,
"variablesClustered": True,
"colorSpectrum": ["blue", "white", "red"],
"varOverlays": ["c", "-", "p1_a", "p1_b", "p1_c", "p1_d", "-", "p2", "-", "F1_01", "F1_02", "F1_03", "F1_04", "F1_05", "F1_06", "F1_07", "F1_08", "F1_09", "F1_10", "F1_11", "F1_12", "F1_13", "F1_14", "F1_15", "F1_16"],
"varOverlayProperties": {
"c": {
"type": "Default",
"position": "top",
"showLegend": True,
"thickness": 20
},
"p1_a": {
"type": "Pie",
"position": "top",
"showLegend": True,
"thickness": 50,
"hideName": True
},
"p1_b": {
"type": "Pie",
"position": "top",
"showLegend": True,
"thickness": 50,
"hideName": True
},
"p1_c": {
"type": "Pie",
"position": "top",
"showLegend": True,
"thickness": 50,
"hideName": True
},
"p1_d": {
"type": "Pie",
"position": "top",
"showLegend": True,
"thickness": 50,
"hideName": True
},
"p2": {
"type": "Bar",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 40,
"hideName": True
},
"F1_01": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_02": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_03": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_04": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_05": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_06": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_07": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_08": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_09": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_10": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_11": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_12": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_13": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_14": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_15": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
},
"F1_16": {
"type": "Violin",
"position": "top",
"color": "rgb(49,130,189)",
"thickness": 90,
"hideName": True
}
},
"smpOverlays": ["rows", "-", "rp_a", "rp_b", "rp_c", "-", "rv_01", "rv_02", "rv_03", "rv_04", "rv_05", "rv_06", "rv_07", "rv_08", "rv_09", "rv_10", "rv_11", "rv_12"],
"smpOverlayProperties": {
"rows": {
"type": "Default",
"position": "left",
"showLegend": True,
"thickness": 20
},
"rp_a": {
"type": "Pie",
"position": "right",
"showLegend": True,
"thickness": 50,
"hideName": True
},
"rp_b": {
"type": "Pie",
"position": "right",
"showLegend": True,
"thickness": 50,
"hideName": True
},
"rp_c": {
"type": "Pie",
"position": "right",
"showLegend": True,
"thickness": 50,
"hideName": True
},
"rv_01": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_02": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_03": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_04": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_05": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_06": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_07": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_08": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_09": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_10": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_11": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
},
"rv_12": {
"type": "Violin",
"position": "right",
"color": "rgb(49,130,189)",
"thickness": 80,
"hideName": True
}
},
"showSmpDendrogram": True,
"showVarDendrogram": True,
"title": "Heatmap with violin, pie, bar and categorical annotation tracks"
},
width = 600,
height = 600
)
)
using CanvasXpress
canvasxpress(Dict(
"y" => Dict(
"vars" => ["V1", "V2", "V3", "V4", "V5", "V6", "V7", "V8"],
"smps" => ["S1", "S2", "S3", "S4", "S5", "S6"],
"data" => [
[0.372, 0.932, 1.148, -0.98, -1.265, -0.823],
[0.967, 1.184, 0.374, -1.253, -0.553, -0.634],
[1.337, 1.144, 0.764, -0.896, 0.1, -0.901],
[0.525, 0.402, 0.833, -0.749, -0.921, -0.822],
[-0.704, -0.558, -0.416, 0.873, 0.174, 1.046],
[-1.297, -0.86, -1.316, 0.801, 0.528, 0.875],
[0.355, -0.817, -0.505, 0.337, 0.699, 1.032],
[-0.832, -0.67, -0.764, 0.448, 0.997, 0.516]
]
),
"x" => Dict(
"rows" => ["A", "A", "A", "B", "B", "B"],
"rp_a" => [4.26, 6.33, 5.29, 3.14, 2.6, 3.06],
"rp_b" => [1.77, 3.1, 3.22, 3.28, 5.27, 3.15],
"rp_c" => [1.31, 5.08, 1.89, 2.83, 3.3, 2.98],
"rv_01" => [-3.1, -2.27, 0.4, 1.33, 1.85, 3.24],
"rv_02" => [-1.18, -1.16, -1.05, -0.16, 1.05, 2.14],
"rv_03" => [-1.45, -0.58, -1.48, 1.74, 2.04, 1.77],
"rv_04" => [-1.73, -1.26, -2.37, 1.11, 1.06, 3.21],
"rv_05" => [-0.59, -0.91, -1.06, 2.92, 2.0, 2.73],
"rv_06" => [-3.16, -2.22, -2.81, 2.8, 1.36, 1.88],
"rv_07" => [-1.56, -0.51, -2.87, 0.97, 2.9, 0.78],
"rv_08" => [-1.5, -2.63, -2.12, -0.0, 2.78, 1.45],
"rv_09" => [-2.99, 0.28, -1.22, 5.86, 2.45, 1.62],
"rv_10" => [-1.88, -0.23, -2.03, 2.5, 2.57, 1.0],
"rv_11" => [-1.86, -2.55, -3.37, 2.96, 2.73, 2.08],
"rv_12" => [-3.0, -4.21, -1.47, 1.89, 0.15, 1.93]
),
"z" => Dict(
"c" => ["G1", "G2", "G3", "G4", "G1", "G2", "G3", "G4"],
"p1_a" => [6.31, 2.74, 4.53, 3.5, 4.93, 2.6, 5.0, 3.31],
"p1_b" => [5.39, 4.44, 3.71, 2.33, 4.65, 4.2, 5.96, 2.93],
"p1_c" => [4.33, 4.26, 3.92, 3.81, 3.77, 2.6, 1.98, 2.91],
"p1_d" => [4.39, 5.77, 4.97, 5.08, 4.67, 4.55, 3.78, 4.66],
"p2" => [5.85, 5.02, 2.52, 5.42, 2.05, 2.97, 5.27, 4.21],
"F1_01" => [0.58, 0.06, -1.79, -0.19, 1.01, 2.9, 3.04, 1.82],
"F1_02" => [-3.23, -5.86, -0.41, 0.63, 4.33, -0.25, 1.59, 2.7],
"F1_03" => [0.21, 0.36, -0.75, -0.76, -0.6, 1.83, 0.98, 0.97],
"F1_04" => [-2.13, -2.53, -3.98, -0.35, 3.83, 1.75, 1.78, 0.78],
"F1_05" => [-3.51, -1.62, -3.59, 1.63, 3.1, 1.56, 2.67, -0.88],
"F1_06" => [-3.61, -1.7, -0.11, -4.27, 0.48, 1.48, 1.8, 0.34],
"F1_07" => [-3.03, -0.61, 1.83, -1.21, 3.78, 1.86, 1.21, 1.33],
"F1_08" => [-2.05, -1.85, -0.82, -3.71, -0.76, 3.44, 1.03, 4.69],
"F1_09" => [-1.03, -0.16, 0.28, -4.91, 1.6, -2.68, 1.44, 2.58],
"F1_10" => [-1.37, -2.03, -1.46, -1.28, 1.79, 1.13, 1.21, 1.29],
"F1_11" => [-2.19, -0.67, -3.03, -2.75, 0.47, 0.12, 3.1, -1.69],
"F1_12" => [-2.29, -1.09, -3.08, -3.09, 0.91, 0.05, 0.53, 3.17],
"F1_13" => [-2.71, -0.87, 1.21, -3.62, 3.92, 1.79, 0.68, 0.29],
"F1_14" => [-3.92, -3.66, -4.29, -0.76, 3.09, 1.94, 4.57, 2.55],
"F1_15" => [-3.87, -0.2, -1.5, -1.55, -0.15, 1.5, 2.93, -0.16],
"F1_16" => [-2.12, -3.54, -0.48, -3.15, 1.61, 4.35, 2.97, 0.45]
)
);
graphType = "Heatmap",
samplesClustered = true,
variablesClustered = true,
colorSpectrum = ["blue", "white", "red"],
varOverlays = ["c", "-", "p1_a", "p1_b", "p1_c", "p1_d", "-", "p2", "-", "F1_01", "F1_02", "F1_03", "F1_04", "F1_05", "F1_06", "F1_07", "F1_08", "F1_09", "F1_10", "F1_11", "F1_12", "F1_13", "F1_14", "F1_15", "F1_16"],
varOverlayProperties = Dict(
"c" => Dict(
"type" => "Default",
"position" => "top",
"showLegend" => true,
"thickness" => 20
),
"p1_a" => Dict(
"type" => "Pie",
"position" => "top",
"showLegend" => true,
"thickness" => 50,
"hideName" => true
),
"p1_b" => Dict(
"type" => "Pie",
"position" => "top",
"showLegend" => true,
"thickness" => 50,
"hideName" => true
),
"p1_c" => Dict(
"type" => "Pie",
"position" => "top",
"showLegend" => true,
"thickness" => 50,
"hideName" => true
),
"p1_d" => Dict(
"type" => "Pie",
"position" => "top",
"showLegend" => true,
"thickness" => 50,
"hideName" => true
),
"p2" => Dict(
"type" => "Bar",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 40,
"hideName" => true
),
"F1_01" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
),
"F1_02" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
),
"F1_03" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
),
"F1_04" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
),
"F1_05" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
),
"F1_06" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
),
"F1_07" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
),
"F1_08" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
),
"F1_09" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
),
"F1_10" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
),
"F1_11" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
),
"F1_12" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
),
"F1_13" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
),
"F1_14" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
),
"F1_15" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
),
"F1_16" => Dict(
"type" => "Violin",
"position" => "top",
"color" => "rgb(49,130,189)",
"thickness" => 90,
"hideName" => true
)
),
smpOverlays = ["rows", "-", "rp_a", "rp_b", "rp_c", "-", "rv_01", "rv_02", "rv_03", "rv_04", "rv_05", "rv_06", "rv_07", "rv_08", "rv_09", "rv_10", "rv_11", "rv_12"],
smpOverlayProperties = Dict(
"rows" => Dict(
"type" => "Default",
"position" => "left",
"showLegend" => true,
"thickness" => 20
),
"rp_a" => Dict(
"type" => "Pie",
"position" => "right",
"showLegend" => true,
"thickness" => 50,
"hideName" => true
),
"rp_b" => Dict(
"type" => "Pie",
"position" => "right",
"showLegend" => true,
"thickness" => 50,
"hideName" => true
),
"rp_c" => Dict(
"type" => "Pie",
"position" => "right",
"showLegend" => true,
"thickness" => 50,
"hideName" => true
),
"rv_01" => Dict(
"type" => "Violin",
"position" => "right",
"color" => "rgb(49,130,189)",
"thickness" => 80,
"hideName" => true
),
"rv_02" => Dict(
"type" => "Violin",
"position" => "right",
"color" => "rgb(49,130,189)",
"thickness" => 80,
"hideName" => true
),
"rv_03" => Dict(
"type" => "Violin",
"position" => "right",
"color" => "rgb(49,130,189)",
"thickness" => 80,
"hideName" => true
),
"rv_04" => Dict(
"type" => "Violin",
"position" => "right",
"color" => "rgb(49,130,189)",
"thickness" => 80,
"hideName" => true
),
"rv_05" => Dict(
"type" => "Violin",
"position" => "right",
"color" => "rgb(49,130,189)",
"thickness" => 80,
"hideName" => true
),
"rv_06" => Dict(
"type" => "Violin",
"position" => "right",
"color" => "rgb(49,130,189)",
"thickness" => 80,
"hideName" => true
),
"rv_07" => Dict(
"type" => "Violin",
"position" => "right",
"color" => "rgb(49,130,189)",
"thickness" => 80,
"hideName" => true
),
"rv_08" => Dict(
"type" => "Violin",
"position" => "right",
"color" => "rgb(49,130,189)",
"thickness" => 80,
"hideName" => true
),
"rv_09" => Dict(
"type" => "Violin",
"position" => "right",
"color" => "rgb(49,130,189)",
"thickness" => 80,
"hideName" => true
),
"rv_10" => Dict(
"type" => "Violin",
"position" => "right",
"color" => "rgb(49,130,189)",
"thickness" => 80,
"hideName" => true
),
"rv_11" => Dict(
"type" => "Violin",
"position" => "right",
"color" => "rgb(49,130,189)",
"thickness" => 80,
"hideName" => true
),
"rv_12" => Dict(
"type" => "Violin",
"position" => "right",
"color" => "rgb(49,130,189)",
"thickness" => 80,
"hideName" => true
)
),
showSmpDendrogram = true,
showVarDendrogram = true,
title = "Heatmap with violin, pie, bar and categorical annotation tracks"
)



















