Genome Browser Features : General parameters used in genome browser features

# featureConfigurableProperties

Feature configurable properties
@features {id:[string];Feature id;[],fill:[color];Color for the feature;[]}

Type: array

Default: [id, name, label, hideName, fill, outline, dir, showDir, connect, offset, data, subtype, quality, signalToNoise, coordinate, sequence, trace, gaps, translate, hide, counter]

Used in: Genome

# featureCoordinateHeight

Default size in pixels of the coordinates height

Type: integer

Default: 14

Used in: Genome

# featureCoordinateShow

Flag to use to show coordinates

Type: boolean

Default: true

Used in: Genome

# featureDirColor

Color for the strand direction of the feature in the genome browser

Type: color

Default: rgb(0,0,0)

Used in: Genome

# featureFillColor

Color for the fill of the feature in the genome browser

Type: color

Default: rgb(255,255,255)

Used in: Genome

# featureHeightDefault

Default size in pixels of the feature height

Type: integer

Default: 14

Used in: Genome

# featureNameAlign

Alignment (or position) for the feature name

Type: string

Default: center

Options: left, center, right

Used in: Genome

# featureNameBaseline

Baseline (or reference line) for the feature name

Type: string

Default: middle

Options: top, middle, bottom

Used in: Genome

# featureNameColor

Color for the text in feature name

Type: color

Default: rgb(0,0,0)

Used in: Genome

# featureNameFontSize

Font size for the text in feature name. Be aware that auto scaling font must be turned off for this property to take effect. A more convenient way to modify the size is to use the featureNameScaleFontFactor

Type: integer

Default: 11

Used in: Genome

# featureNameFontStyle

Font style for the feature name

Type: string

Default:

Options: , bold, italic, bold italic

Used in: Genome

# featureNameMargin

Margin to pad or separate the characters in the feature name

Type: float

Default: 8

Used in: Genome

# featureNameRotate

Rotation in degrees for the feature name

Type: integer

Default:

Used in: Genome

# featureNameScaleFontFactor

Scaling factor used to increase or decrease the feature name font size in the canvas

Type: float

Default: 1

Used in: Genome

# featureQualityHeight

Default size in pixels of the quality height

Type: integer

Default: 14

Used in: Genome

# featureQualityShow

Flag to use to show quality

Type: boolean

Default: true

Used in: Genome

# featureQualityValues

Flag to use to show values for the quality

Type: boolean

Default: false

Used in: Genome

# featureSignalToNoiseHeight

Default size in pixels of the quality height

Type: integer

Default: 14

Used in: Genome

# featureSignalToNoiseShow

Flag to use to show quality

Type: boolean

Default: true

Used in: Genome

# featureSignalToNoiseValues

Flag to use to show values for the quality

Type: boolean

Default: false

Used in: Genome

# featureSpliceStyle

Default style for splicing in boxes

Type: string

Default: rect

Options: rect, broken

Used in: Genome

# featureStaggered

Flag to use to stagger the features in the genome panel

Type: boolean

Default: false

Used in: Genome

# featureTraceHeight

Default size in pixels of the trace height

Type: integer

Default: 40

Used in: Genome

# featureTraceTrim

Default triming for nucleotide values in the traces (expressed in percent)

Type: integer

Default: 1

Used in: Genome

# featureTracesShow

Flag to use to show traces

Type: boolean

Default: true

Used in: Genome

# featureTranslateHeight

Default size in pixels of the translation height

Type: integer

Default: 14

Used in: Genome

# featureTranslateShow

Flag to use to show tranlation

Type: boolean

Default: true

Used in: Genome

# featureTypeDefault

Default type for the feature in the genome browser

Type: string

Default: line

Options: box, bar, heatmap, sequence, triangle, line

Used in: Genome

# featureWidthDefault

Default size in pixels of the feature width

Type: integer

Default: 3

Used in: Genome

# maxFeatureStringLen

Maximum length in characters a feature label can have so anything above is truncated

Type: integer

Default: 30

Used in: Genome

# showFeatureNameThereshold

Threshehold used to set te limit when there are too many features in the genome browser

Type: integer

Default: 20

Used in: Genome